These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1123 fasta sequence [CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAAACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTATGATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT] [+] EMBL AK058598 [CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAAACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTATGATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT] consensusID : consensus_1996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1048 fasta sequence [CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTATCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA] [+] EMBL AK069753 [CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTATCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1996#0 CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGC 60 consensus_1996#1 ---------------------------CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGC 33 ********************************* consensus_1996#0 CGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGG 120 consensus_1996#1 CGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGG 93 ************************************************************ consensus_1996#0 CTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAA 180 consensus_1996#1 CTCATCAG---------------------------------------------------- 101 ******** consensus_1996#0 ACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTAT 240 consensus_1996#1 ------------------------------------------------------------ consensus_1996#0 GATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTC 300 consensus_1996#1 -----------TGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTC 150 ************************************************* consensus_1996#0 TCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGA 360 consensus_1996#1 TCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGA 210 ************************************************************ consensus_1996#0 GCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGA 420 consensus_1996#1 GCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGA 270 ************************************************************ consensus_1996#0 TCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGT 480 consensus_1996#1 TCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGT 330 ************************************************************ consensus_1996#0 GGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCAT 540 consensus_1996#1 GGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCAT 390 *************** ******************************************** consensus_1996#0 GGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAA 600 consensus_1996#1 GGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAA 450 ************************************************************ consensus_1996#0 GGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCA 660 consensus_1996#1 GGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCA 510 ************************************************************ consensus_1996#0 GAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGG 720 consensus_1996#1 GAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGG 570 ************************************************************ consensus_1996#0 AACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGAC 780 consensus_1996#1 AACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGAC 630 ************************************************************ consensus_1996#0 AGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAG 840 consensus_1996#1 AGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAG 690 ************************************************************ consensus_1996#0 CAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCG 900 consensus_1996#1 CAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCG 750 ************************************************************ consensus_1996#0 TTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCG 960 consensus_1996#1 TTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCG 810 ************************************************************ consensus_1996#0 GACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGT 1020 consensus_1996#1 GACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGT 870 ************************************************************ consensus_1996#0 CACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAG 1080 consensus_1996#1 CACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAG 930 ************************************************************ consensus_1996#0 TTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT----------------- 1123 consensus_1996#1 TTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTA 990 ******************************************* consensus_1996#0 ---------------------------------------------------------- consensus_1996#1 TCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA 1048 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||