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Oryza sativa
cluster # 1996 cluster # 1996       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1996#0 length = 1123 sequences # 1  
consensus_1996#1 length = 1048 sequences # 1  

consensusID : consensus_1996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1123
fasta sequence
                              [CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAAACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTATGATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT]

[+] EMBL AK058598             [CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAAACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTATGATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT]


>consensus_1996#0 CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGC CGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGG CTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAA ACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTAT GATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTC TCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGA GCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGA TCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGT GGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCAT GGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAA GGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCA GAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGG AACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGAC AGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAG CAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCG TTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCG GACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGT CACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAG TTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT



consensusID : consensus_1996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1048
fasta sequence
                              [CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTATCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA]

[+] EMBL AK069753             [CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTATCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA]


>consensus_1996#1 CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGC GCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGTGGATCGCTGCACTTCCTG AGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATC TATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCAT TTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAAT CCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATCGCCAATAACACACC ACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGT TTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCC ACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACA TCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGG CAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCA CACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCA GATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTT CGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGG TCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTC AGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCAT GAGATTGCAGGTTCTTCGACAGTAAAATTATCAAATTTGTACGGTTGGAAGGATTTTCAG TTAATTAACTTATAATGTTACGCACGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1996#0      CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGC 60
consensus_1996#1      ---------------------------CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGC 33
                                                 *********************************

consensus_1996#0      CGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGG 120
consensus_1996#1      CGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGG 93
                      ************************************************************

consensus_1996#0      CTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAA 180
consensus_1996#1      CTCATCAG---------------------------------------------------- 101
                      ********                                                    

consensus_1996#0      ACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTAT 240
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      GATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTC 300
consensus_1996#1      -----------TGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTC 150
                                 *************************************************

consensus_1996#0      TCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGA 360
consensus_1996#1      TCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGA 210
                      ************************************************************

consensus_1996#0      GCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGA 420
consensus_1996#1      GCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGA 270
                      ************************************************************

consensus_1996#0      TCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGT 480
consensus_1996#1      TCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGT 330
                      ************************************************************

consensus_1996#0      GGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCAT 540
consensus_1996#1      GGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCAT 390
                      *************** ********************************************

consensus_1996#0      GGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAA 600
consensus_1996#1      GGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAA 450
                      ************************************************************

consensus_1996#0      GGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCA 660
consensus_1996#1      GGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCA 510
                      ************************************************************

consensus_1996#0      GAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGG 720
consensus_1996#1      GAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGG 570
                      ************************************************************

consensus_1996#0      AACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGAC 780
consensus_1996#1      AACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGAC 630
                      ************************************************************

consensus_1996#0      AGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAG 840
consensus_1996#1      AGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAG 690
                      ************************************************************

consensus_1996#0      CAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCG 900
consensus_1996#1      CAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCG 750
                      ************************************************************

consensus_1996#0      TTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCG 960
consensus_1996#1      TTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCG 810
                      ************************************************************

consensus_1996#0      GACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGT 1020
consensus_1996#1      GACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGT 870
                      ************************************************************

consensus_1996#0      CACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAG 1080
consensus_1996#1      CACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAG 930
                      ************************************************************

consensus_1996#0      TTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT----------------- 1123
consensus_1996#1      TTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTA 990
                      *******************************************                 

consensus_1996#0      ----------------------------------------------------------
consensus_1996#1      TCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA 1048
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)