|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1358 fasta sequence
[GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATGACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGCGCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAACAGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTCCCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGCCTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGACCACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGCGCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTGGGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGGAGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTCCAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGCAGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATGGAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGGTCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTGGTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAAGGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCAGGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTTTACACTTCAGATATTGCTATATGGAGGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTATCTTTTAAGATGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTTCAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA]
[+] EMBL AK107254 [GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATGACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGCGCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAACAGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTCCCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGCCTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGACCACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGCGCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTGGGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGGAGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTCCAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGCAGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATGGAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGGTCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTGGTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAAGGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCAGGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTTTACACTTCAGATATTGCTATATGGAGGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTATCTTTTAAGATGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTTCAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA]
consensusID : consensus_2008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[TTCGCAGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCAAGCCAANTGAAAAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTTTACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANATGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN]
[+] EMBL BE228500 [TTCGCAGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCAAGCCAANTGAAAAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTTTACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANATGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2008#0 GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATG 60
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 ACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCC 120
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 CTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGC 180
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 GCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAAC 240
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 AGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTC 300
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 CCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGC 360
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 CTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGAC 420
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 CACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGC 480
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 GCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTG 540
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 GGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGG 600
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 AGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTC 660
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 CAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGC 720
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 AGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATG 780
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 GAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGG 840
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 TCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTG 900
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 GTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAA 960
consensus_2008#1 ---------------------------------------------------TTCGC---- 5
*****
consensus_2008#0 GGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCA 1020
consensus_2008#1 ----AGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCA 61
* ******************* * ************ * ** ************
consensus_2008#0 GGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTT 1080
consensus_2008#1 AGCCAANTGAA-AAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTT 120
***** **** ** ****** * ** *************** ***** ****** ****
consensus_2008#0 TACACTTCAGATATTGCTATATGGA-GGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGT 1139
consensus_2008#1 TACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGT 180
********* ************** ****** ***** ***** *************
consensus_2008#0 GACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAG-TCCTCTTATTATCTTTTAAGA 1198
consensus_2008#1 GACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANA 240
******************************* * *** ****** ************ *
consensus_2008#0 TGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTT 1258
consensus_2008#1 TGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN-------------- 286
************ * *** * * ******** * * * *
consensus_2008#0 CAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATT 1318
consensus_2008#1 ------------------------------------------------------------
consensus_2008#0 TAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA 1358
consensus_2008#1 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||