cluster # 2011

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Oryza sativa
cluster # 2011 cluster # 2011 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2011#0 length = 403 sequences # 1

consensus_2011#1 length = 241 sequences # 1

consensusID : consensus_2011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCCAAAAACAAGGTTTCTTTGAACAAAACAAGGTTTTACTTCCATTCAACCAAAAGTCAAAATTTGTTGAAACCCCCCGCCAACTAAAACACAGGGGGTCACAAACCCAACGACCCACACGGGGCACACAAATTAATATTGTTAGCGTTGTTACCCCCAAAACCATAAAATTTGTACTCGTTTACCCTCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCTTGGGGGGAACGGTTTTGCGGGGGGCGTCCTCGGTGTAGGTAACGGCTTCCCGGATAACTTTTTCAAGGAAAATTTTGACCCCCCCGGGGGTTTCCTCTTAAATAACCCCGGAAATG]

[+] EMBL CF331624             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCCAAAAACAAGGTTTCTTTGAACAAAACAAGGTTTTACTTCCATTCAACCAAAAGTCAAAATTTGTTGAAACCCCCCGCCAACTAAAACACAGGGGGTCACAAACCCAACGACCCACACGGGGCACACAAATTAATATTGTTAGCGTTGTTACCCCCAAAACCATAAAATTTGTACTCGTTTACCCTCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCTTGGGGGGAACGGTTTTGCGGGGGGCGTCCTCGGTGTAGGTAACGGCTTCCCGGATAACTTTTTCAAGGAAAATTTTGACCCCCCCGGGGGTTTCCTCTTAAATAACCCCGGAAATG]




>consensus_2011#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCCAAAAACAAGG
TTTCTTTGAACAAAACAAGGTTTTACTTCCATTCAACCAAAAGTCAAAATTTGTTGAAAC
CCCCCGCCAACTAAAACACAGGGGGTCACAAACCCAACGACCCACACGGGGCACACAAAT
TAATATTGTTAGCGTTGTTACCCCCAAAACCATAAAATTTGTACTCGTTTACCCTCCAAA
CCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCTTGGGGGGAACGGT
TTTGCGGGGGGCGTCCTCGGTGTAGGTAACGGCTTCCCGGATAACTTTTTCAAGGAAAAT
TTTGACCCCCCCGGGGGTTTCCTCTTAAATAACCCCGGAAATG

consensusID : consensus_2011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [AACAAAACCCTAACCAACCCTAACGGCTTAAAATTTGGATCAACCACAGGGGGCCGGAAACTCACCCCCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCATGGCGGTAACGGTTTTGCGGGGGGCGTCCTCCTTTTAGGTAACGGCTTCCCGGATAACTTTCTCAAGGAAAATCTTGACCCCCCCGGGGGTCTCCTCGTAAATACACCCCGGAAATGCCCT]

[+] EMBL CF316222             [AACAAAACCCTAACCAACCCTAACGGCTTAAAATTTGGATCAACCACAGGGGGCCGGAAACTCACCCCCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCATGGCGGTAACGGTTTTGCGGGGGGCGTCCTCCTTTTAGGTAACGGCTTCCCGGATAACTTTCTCAAGGAAAATCTTGACCCCCCCGGGGGTCTCCTCGTAAATACACCCCGGAAATGCCCT]




>consensus_2011#1
AACAAAACCCTAACCAACCCTAACGGCTTAAAATTTGGATCAACCACAGGGGGCCGGAAA
CTCACCCCCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCA
TGGCGGTAACGGTTTTGCGGGGGGCGTCCTCCTTTTAGGTAACGGCTTCCCGGATAACTT
TCTCAAGGAAAATCTTGACCCCCCCGGGGGTCTCCTCGTAAATACACCCCGGAAATGCCC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2011#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCCAAAAACAAGG 60
consensus_2011#1      ------------------------------------------------------------
                                                                                  

consensus_2011#0      TTTCTTTGAACAAAACAAGGTTTTACTTCCATTCAACCAAAAGTCAAAATTTGTTGAAAC 120
consensus_2011#1      ------------------------------------------------------------
                                                                                  

consensus_2011#0      CCCCCGCCAACTAAAACACAGGGGGTCACAAACCCAACGACCCACACGGGGCACACAAAT 180
consensus_2011#1      ----------------------------------------------AACAAAACCCTAAC 14
                                                                          ** * ** 

consensus_2011#0      TAATATTGTTAGCGTTGTTACCCCCAAAACCATAAAATTTGTACTCGTTTACCCTCCAAA 240
consensus_2011#1      CAACCCTAACGGCTTAAAATTTGGATCAACCACAGGGGGC-CGGAAACTCACCCCCCAAA 73
                       **   *    ** *            ***** *              * **** *****

consensus_2011#0      CCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCTTGGGGGGAACGGT 300
consensus_2011#1      CCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCATGGCGGTAACGGT 133
                      ********************************************** *** ** ******

consensus_2011#0      TTTGCGGGGGGCGTCCTCGGTGTAGGTAACGGCTTCCCGGATAACTTTTTCAAGGAAAAT 360
consensus_2011#1      TTTGCGGGGGGCGTCCTCCTTTTAGGTAACGGCTTCCCGGATAACTTTCTCAAGGAAAAT 193
                      ******************  * ************************** ***********

consensus_2011#0      TTTGACCCCCCCGGGGGTTTCCTCTTAAATA-ACCCCGGAAATG---- 403
consensus_2011#1      CTTGACCCCCCCGGGGGTCTCCTCGTAAATACACCCCGGAAATGCCCT 241
                       ***************** ***** ****** ************