cluster # 2019

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Oryza sativa
cluster # 2019 cluster # 2019 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2019#0 length = 582 sequences # 1

consensus_2019#1 length = 485 sequences # 1

consensusID : consensus_2019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [TTGTTTTTTCCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACACAGGACCTAATACACACTGTACACCGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGATGGAAGAGCATTTTTCTTGTCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATTTTCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGATATACATTTCTTGCCGTGTGAAACTTCCTCCTATTTGGATGGACTATGATGATGATGAAACATCAGCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCCTGAAACAGGGGGGGTTGAGTGTGTCAAAATGGAGAGTTCACAGTGTTACAATTGCCGTGCGTGTGATACAGACACAGAAAACACTAACCCTGAACGACTTGGTCCGGCGAATGGATGGATCAAGGTCCAGGGCATCAGCATAAGCATCCTCTGCAGCTCGGTACTCTTCCATTGCAAACAGAGCATCGCCTCGTGACAAGTGAGCCTGCATAGAGCAGCACAGCCATGACAAATAGGCCCATG]

[+] EMBL CF332000             [TTGTTTTTTCCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACACAGGACCTAATACACACTGTACACCGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGATGGAAGAGCATTTTTCTTGTCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATTTTCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGATATACATTTCTTGCCGTGTGAAACTTCCTCCTATTTGGATGGACTATGATGATGATGAAACATCAGCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCCTGAAACAGGGGGGGTTGAGTGTGTCAAAATGGAGAGTTCACAGTGTTACAATTGCCGTGCGTGTGATACAGACACAGAAAACACTAACCCTGAACGACTTGGTCCGGCGAATGGATGGATCAAGGTCCAGGGCATCAGCATAAGCATCCTCTGCAGCTCGGTACTCTTCCATTGCAAACAGAGCATCGCCTCGTGACAAGTGAGCCTGCATAGAGCAGCACAGCCATGACAAATAGGCCCATG]




>consensus_2019#0
TTGTTTTTTCCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACA
CAGGACCTAATACACACTGTACACCGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGA
TGGAAGAGCATTTTTCTTGTCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATT
TTCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGATATAC
ATTTCTTGCCGTGTGAAACTTCCTCCTATTTGGATGGACTATGATGATGATGAAACATCA
GCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCCTGAAACAGGGGGGGTTGAGTG
TGTCAAAATGGAGAGTTCACAGTGTTACAATTGCCGTGCGTGTGATACAGACACAGAAAA
CACTAACCCTGAACGACTTGGTCCGGCGAATGGATGGATCAAGGTCCAGGGCATCAGCAT
AAGCATCCTCTGCAGCTCGGTACTCTTCCATTGCAAACAGAGCATCGCCTCGTGACAAGT
GAGCCTGCATAGAGCAGCACAGCCATGACAAATAGGCCCATG

consensusID : consensus_2019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [TTTTTTTTTTCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACACAGGACCTAATACACAGTGTACACTGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGATGGAAGAGCATTTTCCCGGCCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATTTCCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGACATACATTTCTTGCCGTGTGAAACTTCCTCCTATTNGGATGGACTATGATGATGATGAAACATCAGCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCCCTGAACGANTTGGTCCGGCGAATGGATGGATCAAGGTCCAGGGCATCAGCATAAGCATCCTCTGCAGCTCGGTACTCTTCCATTGCAAACAGAGCATCGCCTCGTGACAAGTGAGCCTGAGGAAATTTCGGAGCAATCTTTGTTGC]

[-] EMBL BQ909056             [TTTTTTTTTTCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACACAGGACCTAATACACAGTGTACACTGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGATGGAAGAGCATTTTCCCGGCCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATTTCCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGACATACATTTCTTGCCGTGTGAAACTTCCTCCTATTNGGATGGACTATGATGATGATGAAACATCAGCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCCCTGAACGANTTGGTCCGGCGAATGGATGGATCAAGGTCCAGGGCATCAGCATAAGCATCCTCTGCAGCTCGGTACTCTTCCATTGCAAACAGAGCATCGCCTCGTGACAAGTGAGCCTGAGGAAATTTCGGAGCAATCTTTGTTGC]




>consensus_2019#1
TTTTTTTTTTCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACA
CAGGACCTAATACACAGTGTACACTGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGA
TGGAAGAGCATTTTCCCGGCCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATT
TCCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGACATAC
ATTTCTTGCCGTGTGAAACTTCCTCCTATTNGGATGGACTATGATGATGATGAAACATCA
GCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCCCTGAACGANTTGGTCCGGCGA
ATGGATGGATCAAGGTCCAGGGCATCAGCATAAGCATCCTCTGCAGCTCGGTACTCTTCC
ATTGCAAACAGAGCATCGCCTCGTGACAAGTGAGCCTGAGGAAATTTCGGAGCAATCTTT
GTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2019#0      TTGTTTTTTCCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACA 60
consensus_2019#1      TTTTTTTTTTCGGAAGCTGGTTATCAACCAACAGATTCTCAGAATCTTAAACTCTCCACA 60
                      ** ****** **************************************************

consensus_2019#0      CAGGACCTAATACACACTGTACACCGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGA 120
consensus_2019#1      CAGGACCTAATACACAGTGTACACTGCTAAGAATGATTAAGGACTTTTCTTTAAAGATGA 120
                      **************** ******* ***********************************

consensus_2019#0      TGGAAGAGCATTTTTCTTGTCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATT 180
consensus_2019#1      TGGAAGAGCATTTTCCCGGCCTCCATATAGAATGAGTAAAACTAACTAGACAGGAATATT 180
                      ************** *  * ****************************************

consensus_2019#0      TTCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGATATAC 240
consensus_2019#1      TCCATTGTTTCACTAAACTATTCACTATTCAGAATTTTCCCATCCGCCCGTCAGACATAC 240
                      * ***************************************************** ****

consensus_2019#0      ATTTCTTGCCGTGTGAAACTTCCTCCTATTTGGATGGACTATGATGATGATGAAACATCA 300
consensus_2019#1      ATTTCTTGCCGTGTGAAACTTCCTCCTATTNGGATGGACTATGATGATGATGAAACATCA 300
                      ****************************** *****************************

consensus_2019#0      GCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCCTGAAACAGGGGGGGTTGAGTG 360
consensus_2019#1      GCATTGGCAACCTTCTCCCGTAGCTTTTGTACACGAGCC--------------------- 339
                      ***************************************                     

consensus_2019#0      TGTCAAAATGGAGAGTTCACAGTGTTACAATTGCCGTGCGTGTGATACAGACACAGAAAA 420
consensus_2019#1      ------------------------------------------------------------
                                                                                  

consensus_2019#0      CACTAACCCTGAACGACTTGGTCCGGCGAATGGATGGATCAAGGTCCAGGGCATCAGCAT 480
consensus_2019#1      --------CTGAACGANTTGGTCCGGCGAATGGATGGATCAAGGTCCAGGGCATCAGCAT 391
                              ******** *******************************************

consensus_2019#0      AAGCATCCTCTGCAGCTCGGTACTCTTCCATTGCAAACAGAGCATCGCCTCGTGACAAGT 540
consensus_2019#1      AAGCATCCTCTGCAGCTCGGTACTCTTCCATTGCAAACAGAGCATCGCCTCGTGACAAGT 451
                      ************************************************************

consensus_2019#0      GAGCCTGCATAGAGCAGCACAGCCATGACAAATAGGCCCATG 582
consensus_2019#1      GAGCCTG-AGGAAATTTCGGAGCAATCTTTGTTGC------- 485
                      ******* *   *    *  *** **      *