cluster # 202

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Oryza sativa
cluster # 202 cluster # 202 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_202#0 length = 334 sequences # 1

consensus_202#1 length = 328 sequences # 1

consensusID : consensus_202#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [TCTTCTTCTTCTTGTTCTTGTTCTTGTGTCCTGACTGTTCTTGATAAAGCTCAGATTTGGGAATTGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAGTTAGTTGATCATGGCGAGCCGGGAGGAGAGCGGCAATNGCGGTGGCGGTGGCGCGACGCGGTCGGGANTATNACCGGAGCTCGGACAGCCGGAGCTCGAGCCGGCGGCANACGCGGNTTCAAGGAGGACAACGAGTACGTGGAGATCACGCTCGACGTCAAGGGCGACGACACGGTCGCATTCCAGAGCATCCGCAACGGCGCCGACATGCCCGAGGTCGCCCTCCTACGN]

[+] EMBL OSC479               [TCTTCTTCTTCTTGTTCTTGTTCTTGTGTCCTGACTGTTCTTGATAAAGCTCAGATTTGGGAATTGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAGTTAGTTGATCATGGCGAGCCGGGAGGAGAGCGGCAATNGCGGTGGCGGTGGCGCGACGCGGTCGGGANTATNACCGGAGCTCGGACAGCCGGAGCTCGAGCCGGCGGCANACGCGGNTTCAAGGAGGACAACGAGTACGTGGAGATCACGCTCGACGTCAAGGGCGACGACACGGTCGCATTCCAGAGCATCCGCAACGGCGCCGACATGCCCGAGGTCGCCCTCCTACGN]




>consensus_202#0
TCTTCTTCTTCTTGTTCTTGTTCTTGTGTCCTGACTGTTCTTGATAAAGCTCAGATTTGG
GAATTGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAGTTAGTTGATCATGGCGA
GCCGGGAGGAGAGCGGCAATNGCGGTGGCGGTGGCGCGACGCGGTCGGGANTATNACCGG
AGCTCGGACAGCCGGAGCTCGAGCCGGCGGCANACGCGGNTTCAAGGAGGACAACGAGTA
CGTGGAGATCACGCTCGACGTCAAGGGCGACGACACGGTCGCATTCCAGAGCATCCGCAA
CGGCGCCGACATGCCCGAGGTCGCCCTCCTACGN

consensusID : consensus_202#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [AAGATTCACCCTATTGGTTGCACGTATTGGTTGATGGCTCTTATCTATCTAATTTGGGAATAGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAGGTACATTTGGAGTTTGGATTAATTTCAGTTAGTTGATCATGGCGAGCCGGGAGGAGAGCGGCAATGGCGGTGGCGGTGGCTCTACGCCGGCGGCGGATTACCGGAGCTCGGACAGCCGGAGCTCGAGCCGGCGGAGCACGCGGTTCAAGGAGGACAACGAGTACGTGGAGATCACGCTCGACGTCAATGGCGACGACACGGTCGCCATCCAGAGCATCCGCAACTGCG]

[+] EMBL CB640773             [AAGATTCACCCTATTGGTTGCACGTATTGGTTGATGGCTCTTATCTATCTAATTTGGGAATAGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAGGTACATTTGGAGTTTGGATTAATTTCAGTTAGTTGATCATGGCGAGCCGGGAGGAGAGCGGCAATGGCGGTGGCGGTGGCTCTACGCCGGCGGCGGATTACCGGAGCTCGGACAGCCGGAGCTCGAGCCGGCGGAGCACGCGGTTCAAGGAGGACAACGAGTACGTGGAGATCACGCTCGACGTCAATGGCGACGACACGGTCGCCATCCAGAGCATCCGCAACTGCG]




>consensus_202#1
AAGATTCACCCTATTGGTTGCACGTATTGGTTGATGGCTCTTATCTATCTAATTTGGGAA
TAGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAGGTACATTTGGAGTTTGGATT
AATTTCAGTTAGTTGATCATGGCGAGCCGGGAGGAGAGCGGCAATGGCGGTGGCGGTGGC
TCTACGCCGGCGGCGGATTACCGGAGCTCGGACAGCCGGAGCTCGAGCCGGCGGAGCACG
CGGTTCAAGGAGGACAACGAGTACGTGGAGATCACGCTCGACGTCAATGGCGACGACACG
GTCGCCATCCAGAGCATCCGCAACTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_202#0      --TCTTCTTCTTCTTGTTCTTGTTCTTGTGTCCTGACTGTTCTTGATAAAGCTCAGATTT 58
consensus_202#1      AAGATTCACCCTATTGG--TTGCACGTATTGGTTGATGGCTCTTATCTA---TCTAATTT 55
                         ***  * * ***   ***  * * *    ***  * ****    *   **  ****

consensus_202#0      GGGAATTGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAG--------------- 103
consensus_202#1      GGGAATAGGACCACATCATAACATTCTTTGGCAGAGTTTGTGAAGGTACATTTGGAGTTT 115
                     ****** **************************************               

consensus_202#0      -------------TTAGTTGATCATGGCGAGCCGGGAGGAGAGCGGCAATNGCGGTGGCG 150
consensus_202#1      GGATTAATTTCAGTTAGTTGATCATGGCGAGCCGGGAGGAGAGCGGCAATGGCGGTGGCG 175
                                  ************************************* *********

consensus_202#0      GTGGCGCGACGCGGTCGGGANTATNACCGGAGCTCGGACAGCCGGAGCTCGAGCCGGCGG 210
consensus_202#1      GTGGCTCTACGCCGGCGGCGG-ATTACCGGAGCTCGGACAGCCGGAGCTCGAGCCGGCGG 234
                     ***** * **** * ***    ** ***********************************

consensus_202#0      CANACGCGGNTTCAAGGAGGACAACGAGTACGTGGAGATCACGCTCGACGTCAAGGGCGA 270
consensus_202#1      AGCACGCGGTT-CAAGGAGGACAACGAGTACGTGGAGATCACGCTCGACGTCAATGGCGA 293
                        ****** * ****************************************** *****

consensus_202#0      CGACACGGTCGCATTCCAGAGCATCCGCAACGGCGCCGACATGCCCGAGGTCGCCCTCCT 330
consensus_202#1      CGACACGGTCGCCATCCAGAGCATCCGCAACTGCG------------------------- 328
                     ************  ***************** ***                         

consensus_202#0      ACGN 334
consensus_202#1      ----