These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [CTGTCAACGATACGCTAGTAACGGCATGACATTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATAAACCGGTTTATTACTTGGTCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAACCCGGAAAATTAAAAAATTTTTACCGGGGTAATAAAAGGGGGGCCCGGTCCCTGTTACCAGAAAGGGGCCCCAAAAACCCCCCCCCCAACCAAACCTCCCCCTTTTTACCCCTTTAACCCCTGGGAAGG] [+] EMBL CF321195 [CTGTCAACGATACGCTAGTAACGGCATGACATTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATAAACCGGTTTATTACTTGGTCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAACCCGGAAAATTAAAAAATTTTTACCGGGGTAATAAAAGGGGGGCCCGGTCCCTGTTACCAGAAAGGGGCCCCAAAAACCCCCCCCCCAACCAAACCTCCCCCTTTTTACCCCTTTAACCCCTGGGAAGG] consensusID : consensus_2021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 126 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAATTAAACCGGTTTTTTTCTTGGCCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAAC] [+] EMBL CF332044 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAATTAAACCGGTTTTTTTCTTGGCCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2021#0 CTGTCAACGATACGCTAGTAACGGCATGACATTGGTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_2021#1 -----------------------------------------TTTTTTTTTTTTTTTTTTT 19 ******************* consensus_2021#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATAAACCGGTT 120 consensus_2021#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAATTAAACCGGTT 79 *************************************** * ** ********** consensus_2021#0 TATTACTTGGTCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAACCCGGAAAATTAAA 180 consensus_2021#1 TTTTTCTTGGCCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAAC------------- 126 * ** ***** ************************************ consensus_2021#0 AAATTTTTACCGGGGTAATAAAAGGGGGGCCCGGTCCCTGTTACCAGAAAGGGGCCCCAA 240 consensus_2021#1 ------------------------------------------------------------ consensus_2021#0 AAACCCCCCCCCCAACCAAACCTCCCCCTTTTTACCCCTTTAACCCCTGGGAAGG 295 consensus_2021#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||