These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [ACTCACTGCTTGCTGGCCTGCCTGCGCAACACACCTGGTGGCTGCTGCAGCCCTGGGCTGGCAGCTGGCCTGTCTGTGTGCCAGCATCTATGTGATGTGTCTAGTCAGCGCAACATCATATACAACATTGCAGCACACTATATGCACAGTGCGCTGCACAGCAGTGCAGCACACAGTGTATCCCCATTGGTTGCACACTGTGCGCACGTTTGACCACCATTGGTGGTCACATGCCTGCATACCGTTCCAGTGTGCACTGTGT] [+] EMBL CB966061 [ACTCACTGCTTGCTGGCCTGCCTGCGCAACACACCTGGTGGCTGCTGCAGCCCTGGGCTGGCAGCTGGCCTGTCTGTGTGCCAGCATCTATGTGATGTGTCTAGTCAGCGCAACATCATATACAACATTGCAGCACACTATATGCACAGTGCGCTGCACAGCAGTGCAGCACACAGTGTATCCCCATTGGTTGCACACTGTGCGCACGTTTGACCACCATTGGTGGTCACATGCCTGCATACCGTTCCAGTGTGCACTGTGT] consensusID : consensus_2022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [CAATAAGCTTGCGGTCTTTCCTGCAAACACCTGGTGGCTGCTGCAGCCCTGTTGCTGGCAGCTGTGCTGTCTGTGATGCCAGCATCCTNTGTGATGTGTCAGATCAGCCAACATCATTCCAACATTGCAGCACACATATATGCACAGTGCCCTGCACAGCAGTGCAGCACACAGTGTTCCCCATTGGTTG] [+] EMBL BU672919 [CAATAAGCTTGCGGTCTTTCCTGCAAACACCTGGTGGCTGCTGCAGCCCTGTTGCTGGCAGCTGTGCTGTCTGTGATGCCAGCATCCTNTGTGATGTGTCAGATCAGCCAACATCATTCCAACATTGCAGCACACATATATGCACAGTGCCCTGCACAGCAGTGCAGCACACAGTGTTCCCCATTGGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2022#0 ACTCACTGCTTGCTGGCCTGCCTGCGCAACACACCTGGTGGCTGCTGCAGCCCTGG-GCT 59 consensus_2022#1 -CAATAAGCTTGCGGTCTTTCCTGC---AAACACCTGGTGGCTGCTGCAGCCCTGTTGCT 56 * ****** * * * ***** * ************************* *** consensus_2022#0 GGCAGCTGGCCTGTCTGTG-TGCCAGCATC-TATGTGATGTGTCTAGTCAGCGCAACATC 117 consensus_2022#1 GGCAGCTGTGCTGTCTGTGATGCCAGCATCCTNTGTGATGTGTCAGATCAGC-CAACATC 115 ******** ********* ********** * *********** ***** ******* consensus_2022#0 ATATACAACATTGCAGCACAC-TATATGCACAGTGCGCTGCACAGCAGTGCAGCACACAG 176 consensus_2022#1 AT-TCCAACATTGCAGCACACATATATGCACAGTGCCCTGCACAGCAGTGCAGCACACAG 174 ** * **************** ************** *********************** consensus_2022#0 TGTATCCCCATTGGTTGCACACTGTGCGCACGTTTGACCACCATTGGTGGTCACATGCCT 236 consensus_2022#1 TGT-TCCCCATTGGTTG------------------------------------------- 190 *** ************* consensus_2022#0 GCATACCGTTCCAGTGTGCACTGTGT 262 consensus_2022#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||