cluster # 2040

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Oryza sativa
cluster # 2040 cluster # 2040 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2040#0 length = 449 sequences # 1

consensus_2040#1 length = 181 sequences # 1

consensusID : consensus_2040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [TTCAGATGTACGAAGCTGCATTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTGTTGCCCCTTCCCTTCGGTTTTTTTGCCCAAGGGGGGAATTTCCGGGGCCTTAAATTAATTTCCCCCTTTTGGGGGGTTTTTTAAATTTCCGGGGGCGGGTTTTTAACACGGTGGGGTGGGGAAACCCCGGGGTTTCCCCAATTTTATTCCTTTGGAAAAATTCCCCTTTTTCCCCGGGGGGTTTAATAGAAAAGGGCCCCCCCCTTTTCCCTTTTCCAAAATTTGGCCCCCTTTTTCCTCGGGGGTTTTAGGGGTTCCCCCTTTAAAAAAAAAACCCCTTTTTCTTTTTTTGGGGGTTCCCCAGGGGTTTTTTTTTCCCCCCCGGGGGCAAGGG]

[+] EMBL CF332966             [TTCAGATGTACGAAGCTGCATTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTGTTGCCCCTTCCCTTCGGTTTTTTTGCCCAAGGGGGGAATTTCCGGGGCCTTAAATTAATTTCCCCCTTTTGGGGGGTTTTTTAAATTTCCGGGGGCGGGTTTTTAACACGGTGGGGTGGGGAAACCCCGGGGTTTCCCCAATTTTATTCCTTTGGAAAAATTCCCCTTTTTCCCCGGGGGGTTTAATAGAAAAGGGCCCCCCCCTTTTCCCTTTTCCAAAATTTGGCCCCCTTTTTCCTCGGGGGTTTTAGGGGTTCCCCCTTTAAAAAAAAAACCCCTTTTTCTTTTTTTGGGGGTTCCCCAGGGGTTTTTTTTTCCCCCCCGGGGGCAAGGG]




>consensus_2040#0
TTCAGATGTACGAAGCTGCATTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTGTTGCC
CCTTCCCTTCGGTTTTTTTGCCCAAGGGGGGAATTTCCGGGGCCTTAAATTAATTTCCCC
CTTTTGGGGGGTTTTTTAAATTTCCGGGGGCGGGTTTTTAACACGGTGGGGTGGGGAAAC
CCCGGGGTTTCCCCAATTTTATTCCTTTGGAAAAATTCCCCTTTTTCCCCGGGGGGTTTA
ATAGAAAAGGGCCCCCCCCTTTTCCCTTTTCCAAAATTTGGCCCCCTTTTTCCTCGGGGG
TTTTAGGGGTTCCCCCTTTAAAAAAAAAACCCCTTTTTCTTTTTTTGGGGGTTCCCCAGG
GGTTTTTTTTTCCCCCCCGGGGGCAAGGG

consensusID : consensus_2040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTTTGGCCCTTCCCTACCGTTTTTTTGCCCAAGGGGGGAAATTCCGGGCCCTTAAATTAATTTCCCCCTTTGGGGGGGGGTT]

[+] EMBL CF292000             [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTTTGGCCCTTCCCTACCGTTTTTTTGCCCAAGGGGGGAAATTCCGGGCCCTTAAATTAATTTCCCCCTTTGGGGGGGGGTT]




>consensus_2040#1
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTTTGGCCCTTCCCTACCGTT
TTTTTGCCCAAGGGGGGAAATTCCGGGCCCTTAAATTAATTTCCCCCTTTGGGGGGGGGT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2040#0      TTCAGATGTACGAAGCTGCATTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 60
consensus_2040#1      -------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 47
                                   *     *       *********************************

consensus_2040#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTGTTGCC 120
consensus_2040#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGT-TTGGC 106
                      *********************************************** ****** *** *

consensus_2040#0      CCTTCCCTTCGGTTTTTTTGCCCAAGGGGGGAATTTCCGGGGCCTTAAATTAATTTCCCC 180
consensus_2040#1      CCTTCCCTACCGTTTTTTTGCCCAAGGGGGGAAATTCCGGGCCCTTAAATTAATTTCCCC 166
                      ******** * ********************** ******* ******************

consensus_2040#0      CTTTTGGGGGGTTTTTTAAATTTCCGGGGGCGGGTTTTTAACACGGTGGGGTGGGGAAAC 240
consensus_2040#1      CTTTGGGGGGGGGTT--------------------------------------------- 181
                      **** ******  **                                             

consensus_2040#0      CCCGGGGTTTCCCCAATTTTATTCCTTTGGAAAAATTCCCCTTTTTCCCCGGGGGGTTTA 300
consensus_2040#1      ------------------------------------------------------------
                                                                                  

consensus_2040#0      ATAGAAAAGGGCCCCCCCCTTTTCCCTTTTCCAAAATTTGGCCCCCTTTTTCCTCGGGGG 360
consensus_2040#1      ------------------------------------------------------------
                                                                                  

consensus_2040#0      TTTTAGGGGTTCCCCCTTTAAAAAAAAAACCCCTTTTTCTTTTTTTGGGGGTTCCCCAGG 420
consensus_2040#1      ------------------------------------------------------------
                                                                                  

consensus_2040#0      GGTTTTTTTTTCCCCCCCGGGGGCAAGGG 449
consensus_2040#1      -----------------------------