These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2041#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [GAGTAGATGTAACATGTAAGAGCCTAGATCACACAAGGCACACCAGGGCATTAGTTTAGATGTGTAAGTTAAGAGCGTTGGCAATGTGATCTGTATCATTGTAGAATTGTCAGATTACTGAAAGAAATCATTGACAAATAATGGTAATTATCGGAGCGATCTGCTGACTGAAGCAGATCGCGTATCGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTTCTTTAAAAAGGGGAAATTCCGGGCCCTAAAATT] [+] EMBL CF332973 [GAGTAGATGTAACATGTAAGAGCCTAGATCACACAAGGCACACCAGGGCATTAGTTTAGATGTGTAAGTTAAGAGCGTTGGCAATGTGATCTGTATCATTGTAGAATTGTCAGATTACTGAAAGAAATCATTGACAAATAATGGTAATTATCGGAGCGATCTGCTGACTGAAGCAGATCGCGTATCGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTTCTTTAAAAAGGGGAAATTCCGGGCCCTAAAATT] consensusID : consensus_2041#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 84 fasta sequence [TTGTAGATTGTCCATTACTGAAAGAAATCATTGAACAAATAATGGTAATTATCGGAGCCGATCTGCTGACTGAAANCAANTCGC] [+] EMBL BE228764 [TTGTAGATTGTCCATTACTGAAAGAAATCATTGAACAAATAATGGTAATTATCGGAGCCGATCTGCTGACTGAAANCAANTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2041#0 GAGTAGATGTAACATGTAAGAGCCTAGATCACACAAGGCACACCAGGGCATTAGTTTAGA 60 consensus_2041#1 ------------------------------------------------------------ consensus_2041#0 TGTGTAAGTTAAGAGCGTTGGCAATGTGATCTGTATCATTGTAGAATTGTCAGATTACTG 120 consensus_2041#1 --------------------------------------TTGTAGA-TTGTCC-ATTACTG 20 ******* ***** ******* consensus_2041#0 AAAGAAATCATTGA-CAAATAATGGTAATTATCGGAGC-GATCTGCTGACTGAA-GCAGA 177 consensus_2041#1 AAAGAAATCATTGAACAAATAATGGTAATTATCGGAGCCGATCTGCTGACTGAAANCAAN 80 ************** *********************** *************** ** consensus_2041#0 TCGCGTATCGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237 consensus_2041#1 TCGC-------------------------------------------------------- 84 **** consensus_2041#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCT 297 consensus_2041#1 ------------------------------------------------------------ consensus_2041#0 TTTTTTCCCCTTTCTTTAAAAAGGGGAAATTCCGGGCCCTAAAATT 343 consensus_2041#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||