Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2044 cluster # 2044       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2044#0 length = 2397 sequences # 2  

consensusID : consensus_2044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2397
fasta sequence
                              [CCGCTTCCTCCGCCGCCTCGGCGCGAAGGCCATCGCCGGATTCCCCGCTTCCTCCGCCTGGATTGCTCCGCACGCAATCGGCCCTGGTTTCTTCCCGGCGGCGTGGTCGTCGCTGTTCCCCACCCGCCGCCGGCGCCGCCGCAGCCGGCGTCTGAGTTGAGGGAGGAGGGAGGAACGGCGGCGCAATGGCGGTGGCTGCGGCGCTGCTGCGCCGGAGGGCGCTCTATTCGGCCCTCGCGTCGCCCTCTTGGCTCCATGATACCAGTTCCTGCTACATTTGCTCCATTTCTGGTACACATTCTTTGGTCAACCATCCCAATTTGAGATTACAGAGGGGCTACCACAACTCTGGGAAGTTTGATTTGACCGACTTGACCCATCCTCATATATGGTATCCGAATGCCCGAGAAAAGAAGCGCAATGTATTTTTACATGTCGGTCCTACAAATAGTGGGAAGACACATAATGCTCTCAAGAGACTAGAAGCAAGTTCTTCAGGAGTATACTGTGGACCTCTTAGATTGTTGGCACGGGAGGTAGGTCAAAGACTAAACAAAGCTAATGTCCCTTGTAACTTAATTACTGGACAAGAAAGGGAGGAAATTGAAGGTGCAAAGCATAGCTCAGTGACAGTTGAGATGGCCGACATGACAACTGAGTATCAATGTGCCGTTATTGATGAAATTCAGATGGTTGGCTGTAGATCGAGGGGTTTTTCATTCACTCGTGCACTTCTGGGGCTTTGTTCAGATGAGCTTCATGTTTGTGGTGACCCAGCTGTGGTTCCTCTCATTCAGCGAATTCTCGAACCTACTGGTGATGTGGTTACGGTCCAATATTATGAGAGGCTATCTCCATTGGTTCCTCTGAAGACTACTCTCGGGTCTTTCTCTAACATTAAGGCAGGGGATTGCGT---TGTAACGTTCTCACGACGATCTATCTATATGCTTAAGAGAAGAATTGAAATGGGGGGTAAGCATCTTTGTTCTGTAGTCTATGGCTCATTGCCACCAGAAACTCGAACAAAACAGGCGACAATGTTCAATGATCAAGATAGTAACCTTAATGTGTTAGTGGCTAGTGATGCTATTGGAATGGGTCTTAATCTGAACATTTCTAGAATCATTTTCTCTACACTGGAGAAGTTTGATGGCATCTGCAACAGGGAACTAACTGTGGCCGAAATCAAACAGATTGCTGGAAGGGCTGGGAGATATGGATCTAAATTCCCAGTTGGTGAAGTGACCTGTCTAAATTCTGATCATCTTCCATTACTACACTCTGCTCTGAAATCACCTTCTCCCATTATAGAGCGCGCTAGACTTTTCCCCACATTCGATGTATTATCTCTGTACTCACGATTGCATGGAACTGATTTTTTTCAACCTATATTGGAGCGTTTCTTGGACAAGGCTAAACTATCTCCAGACTATTTCATTGCTGATTGTGAAGATATGCTGAAAGTTGCTGCTATTGTTGATGAGCTACCACTTGGACTATATGATAAATACCTCTTCTGTCTCAGTCCTGTGGACATTCGTGATGATATATCTACTAAAGGATTAATTCAGTTTGCAGAAAATTATGCAAAGAAAGGTATTGTTCGACTCAAAGAGATATTTACACCTGGGACACTCCAAGTGCCTAAATCGCACAATCAACTGAAGGAGCTTGAATCGATTCACAAGGTGCTAGAGTTGTATGTGTGGTTGAGCTTCAGATTGGAGGATTCCTATCCAGACCGTGAATTGGCAGCTTCCCAAAAGTCAATCTGTAGCATGTTGATTGAAGAATATCTGGAAAGGTCCGGCTGGCAGCAAAATGGACGAAAGGACTTTTTGCAGAAGCCAAAAAGACTACACCAAGAATATGATGCATCACAATTGCGCAAATATTTTCAAGAAATTGATGTGAGGTCAAAATAAGATGCTTATGCTAGAAAGTCGCCTCACAATATCTGCTTCCGGACAACGGATTTGCTCCTGTTTGCATACGTTATGGTCGAGGAGAGGCGACAAGCCGACAATACATTTTATGGATGACAGGAGTCAAAAGAATATCCTTTGCCGACAATACATTTTATGGATGACAGGAGTCAAAAGAATCATCCTTTGCCAAAACCATTTAATTGGCCTAAGCAGTAAATGTGGCAGCACCTGTCCTCCATCCAAACAATTTTGTAGCTATTCTTTCATTACACTTTATTTTAATTATTTCTAACACAGATGGAGCTGTACATCACGATGAAACGTCTAAATGTTCGTTAAAGTTATTAACATAGACAGGACGAAGCCACCTGTAAACTTTGCGGTTGTAACTCTTTGTGTTATGAAAGGTGTAAATATGTCAAAATGACAGTTGTCAAGTGATGTTTCTTGGGCAGCTAAACACCTGATT]

[+] EMBL AK101069             [CCGCTTCCTCCGCCGCCTCGGCGCGAAGGCCATCGCCGGATTCCCCGCTTCCTCCGCCTGGATTGCTCCGCACGCAATCGGCCCTGGTTTCTTCCCGGCGGCGTGGTCGTCGCTGTTCCCCACCCGCCGCCGGCGCCGCCGCAGCCGGCGTCTGAGTTGAGGGAGGAGGGAGGAACGGCGGCGCAATGGCGGTGGCTGCGGCGCTGCTGCGCCGGAGGGCGCTCTATTCGGCCCTCGCGTCGCCCTCTTGGCTCCATGATACCAGTTCCTGCTACATTTGCTCCATTTCTGGTACACATTCTTTGGTCAACCATCCCAATTTGAGATTACAGAGGGGCTACCACAACTCTGGGAAGTTTGATTTGACCGACTTGACCCATCCTCATATATGGTATCCGAATGCCCGAGAAAAGAAGCGCAATGTATTTTTACATGTCGGTCCTACAAATAGTGGGAAGACACATAATGCTCTCAAGAGACTAGAAGCAAGTTCTTCAGGAGTATACTGTGGACCTCTTAGATTGTTGGCACGGGAGGTAGGTCAAAGACTAAACAAAGCTAATGTCCCTTGTAACTTAATTACTGGACAAGAAAGGGAGGAAATTGAAGGTGCAAAGCATAGCTCAGTGACAGTTGAGATGGCCGACATGACAACTGAGTATCAATGTGCCGTTATTGATGAAATTCAGATGGTTGGCTGTAGATCGAGGGGTTTTTCATTCACTCGTGCACTTCTGGGGCTTTGTTCAGATGAGCTTCATGTTTGTGGTGACCCAGCTGTGGTTCCTCTCATTCAGCGAATTCTCGAACCTACTGGTGATGTGGTTACGGTCCAATATTATGAGAGGCTATCTCCATTGGTTCCTCTGAAGACTACTCTCGGGTCTTTCTCTAACATTAAGGCAGGGGATTGCGT   TGTAACGTTCTCACGACGATCTATCTATATGCTTAAGAGAAGAATTGAAATGGGGGGTAAGCATCTTTGTTCTGTAGTCTATGGCTCATTGCCACCAGAAACTCGAACAAAACAGGCGACAATGTTCAATGATCAAGATAGTAACCTTAATGTGTTAGTGGCTAGTGATGCTATTGGAATGGGTCTTAATCTGAACATTTCTAGAATCATTTTCTCTACACTGGAGAAGTTTGATGGCATCTGCAACAGGGAACTAACTGTGGCCGAAATCAAACAGATTGCTGGAAGGGCTGGGAGATATGGATCTAAATTCCCAGTTGGTGAAGTGACCTGTCTAAATTCTGATCATCTTCCATTACTACACTCTGCTCTGAAATCACCTTCTCCCATTATAGAGCGCGCTAGACTTTTCCCCACATTCGATGTATTATCTCTGTACTCACGATTGCATGGAACTGATTTTTTTCAACCTATATTGGAGCGTTTCTTGGACAAGGCTAAACTATCTCCAGACTATTTCATTGCTGATTGTGAAGATATGCTGAAAGTTGCTGCTATTGTTGATGAGCTACCACTTGGACTATATGATAAATACCTCTTCTGTCTCAGTCCTGTGGACATTCGTGATGATATATCTACTAAAGGATTAATTCAGTTTGCAGAAAATTATGCAAAGAAAGGTATTGTTCGACTCAAAGAGATATTTACACCTGGGACACTCCAAGTGCCTAAATCGCACAATCAACTGAAGGAGCTTGAATCGATTCACAAGGTGCTAGAGTTGTATGTGTGGTTGAGCTTCAGATTGGAGGATTCCTATCCAGACCGTGAATTGGCAGCTTCCCAAAAGTCAATCTGTAGCATGTTGATTGAAGAATATCTGGAAAGGTCCGGCTGGCAGCAAAATGGACGAAAGGACTTTTTGCAGAAGCCAAAAAGACTACACCAAGAATATGATGCATCACAATTGCGCAAATATTTTCAAGAAATTGATGTGAGGTCAAAATAAGATGCTTATGCTAGAAAGTCGCCTCACAATATCTGCTTCCGGACAACGGATTTGCTCCTGTTTGCATACGTTATGGTCGAGGAGAGGCGACAAGCCGACAATACATTTTATGGATGACAGGAGTCAAAAGAATATCCTTTGCCGACAATACATTTTATGGATGACAGGAGTCAAAAGAATCATCCTTTGCCAAAACCATTTAATTGGCCTAAGCAGTAAATGTGGCAGCACCTGTCCTCCATCCAAACAATTTTGTAGCTATTCTTTCATTACACTTTATTTTAATTATTTCTAACACAGATGGAGCTGTACATCACGATGAAACGTCTAAATGTTCGTTAAAGTTATTAACATAGACAGGACGAAGCCACCTGTAAACTTTGCGGTTGTAACTCTTTGTGTTATGAAAGGTGTAAATATGTCAAAATGACAGTTGTCAAGTGATGTTTCTTGGGCAGCTAAACACCTGATT]
[+] EMBL AK058367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGACCCAGCTGTGGTTCCTCTCATTCAGCGAATTCTCGAACCTACTGGTGATGTGGTTACGGTCCAATATTATGAGAGGCTATCTCCATTGGTTCCTCTGAAGACTACTCTCGGGTCTTTCTCTAACATTAAGGCAGGGGATTGCGTAAATGTAACGTTCTCACGACGATCTATCTATATGCTTAAGAGAAGAATTGAAATGGGGGGTAAGCATCTTTGTTCTGTAGTCTATGGCTCATTGCCACCAGAAACTCGAACAAAACAGGCGACAATGTTCAATGATCAAGATAGTAACCTTAATGTGTTAGTGGCTAGTGATGCTATTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]


>consensus_2044#0 CCGCTTCCTCCGCCGCCTCGGCGCGAAGGCCATCGCCGGATTCCCCGCTTCCTCCGCCTG GATTGCTCCGCACGCAATCGGCCCTGGTTTCTTCCCGGCGGCGTGGTCGTCGCTGTTCCC CACCCGCCGCCGGCGCCGCCGCAGCCGGCGTCTGAGTTGAGGGAGGAGGGAGGAACGGCG GCGCAATGGCGGTGGCTGCGGCGCTGCTGCGCCGGAGGGCGCTCTATTCGGCCCTCGCGT CGCCCTCTTGGCTCCATGATACCAGTTCCTGCTACATTTGCTCCATTTCTGGTACACATT CTTTGGTCAACCATCCCAATTTGAGATTACAGAGGGGCTACCACAACTCTGGGAAGTTTG ATTTGACCGACTTGACCCATCCTCATATATGGTATCCGAATGCCCGAGAAAAGAAGCGCA ATGTATTTTTACATGTCGGTCCTACAAATAGTGGGAAGACACATAATGCTCTCAAGAGAC TAGAAGCAAGTTCTTCAGGAGTATACTGTGGACCTCTTAGATTGTTGGCACGGGAGGTAG GTCAAAGACTAAACAAAGCTAATGTCCCTTGTAACTTAATTACTGGACAAGAAAGGGAGG AAATTGAAGGTGCAAAGCATAGCTCAGTGACAGTTGAGATGGCCGACATGACAACTGAGT ATCAATGTGCCGTTATTGATGAAATTCAGATGGTTGGCTGTAGATCGAGGGGTTTTTCAT TCACTCGTGCACTTCTGGGGCTTTGTTCAGATGAGCTTCATGTTTGTGGTGACCCAGCTG TGGTTCCTCTCATTCAGCGAATTCTCGAACCTACTGGTGATGTGGTTACGGTCCAATATT ATGAGAGGCTATCTCCATTGGTTCCTCTGAAGACTACTCTCGGGTCTTTCTCTAACATTA AGGCAGGGGATTGCGTTGTAACGTTCTCACGACGATCTATCTATATGCTTAAGAGAAGAA TTGAAATGGGGGGTAAGCATCTTTGTTCTGTAGTCTATGGCTCATTGCCACCAGAAACTC GAACAAAACAGGCGACAATGTTCAATGATCAAGATAGTAACCTTAATGTGTTAGTGGCTA GTGATGCTATTGGAATGGGTCTTAATCTGAACATTTCTAGAATCATTTTCTCTACACTGG AGAAGTTTGATGGCATCTGCAACAGGGAACTAACTGTGGCCGAAATCAAACAGATTGCTG GAAGGGCTGGGAGATATGGATCTAAATTCCCAGTTGGTGAAGTGACCTGTCTAAATTCTG ATCATCTTCCATTACTACACTCTGCTCTGAAATCACCTTCTCCCATTATAGAGCGCGCTA GACTTTTCCCCACATTCGATGTATTATCTCTGTACTCACGATTGCATGGAACTGATTTTT TTCAACCTATATTGGAGCGTTTCTTGGACAAGGCTAAACTATCTCCAGACTATTTCATTG CTGATTGTGAAGATATGCTGAAAGTTGCTGCTATTGTTGATGAGCTACCACTTGGACTAT ATGATAAATACCTCTTCTGTCTCAGTCCTGTGGACATTCGTGATGATATATCTACTAAAG GATTAATTCAGTTTGCAGAAAATTATGCAAAGAAAGGTATTGTTCGACTCAAAGAGATAT TTACACCTGGGACACTCCAAGTGCCTAAATCGCACAATCAACTGAAGGAGCTTGAATCGA TTCACAAGGTGCTAGAGTTGTATGTGTGGTTGAGCTTCAGATTGGAGGATTCCTATCCAG ACCGTGAATTGGCAGCTTCCCAAAAGTCAATCTGTAGCATGTTGATTGAAGAATATCTGG AAAGGTCCGGCTGGCAGCAAAATGGACGAAAGGACTTTTTGCAGAAGCCAAAAAGACTAC ACCAAGAATATGATGCATCACAATTGCGCAAATATTTTCAAGAAATTGATGTGAGGTCAA AATAAGATGCTTATGCTAGAAAGTCGCCTCACAATATCTGCTTCCGGACAACGGATTTGC TCCTGTTTGCATACGTTATGGTCGAGGAGAGGCGACAAGCCGACAATACATTTTATGGAT GACAGGAGTCAAAAGAATATCCTTTGCCGACAATACATTTTATGGATGACAGGAGTCAAA AGAATCATCCTTTGCCAAAACCATTTAATTGGCCTAAGCAGTAAATGTGGCAGCACCTGT CCTCCATCCAAACAATTTTGTAGCTATTCTTTCATTACACTTTATTTTAATTATTTCTAA CACAGATGGAGCTGTACATCACGATGAAACGTCTAAATGTTCGTTAAAGTTATTAACATA GACAGGACGAAGCCACCTGTAAACTTTGCGGTTGTAACTCTTTGTGTTATGAAAGGTGTA AATATGTCAAAATGACAGTTGTCAAGTGATGTTTCTTGGGCAGCTAAACACCTGATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)