These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2493 fasta sequence [ATTCTCCCGTTTGTTTCCCCACAGAAAAAGGGCGCCAGTTCATCATTCCTCGCCATCACATCCACCCGAAAAAAAACATGTCTTTTTTACTCTCTTTCTTCTTCTTCCCCCGATCCCAAATCCCTCCCTGTTCTTGCTGCTGCTCTCGAGTTGAGTGAGTTGACCCTCATCCTCCCCACCCACCCGAATCTCGCGGAGCCATTTCGCGTTCTTGGAGGAGTTGGGGAGTTTTGGTGTTTTTGGATCCGAGGAGCGTGAGAGTTCTTGGATCTCGTCGCCCTCCTCCTCCGGCAATGGCGGCGCTCGCGGAGCACCTGCTGGGTTTGTCGTCGGCGCCGGTGGACTGGGAGGCGGAGTCCTACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGGTAAAATCTGCGCATTGTCTCGTTAGATCCGAGATGCCCTTGGGATTGCAGTGTTGAACTGCTGGTGGTAGACTTGGGAGTTGTTAATGGATCGGTTTGATTATGTTAAGACTGTTAGATAAAAGGCATCTGCTTTTGGGTGTCAGAATTTTCATTTTCAATTATGCAGAGTTCTGGCGTGCAGATTTCATATGCTGTTGAAATTATGAGCATGGTGAAAATGAATGCAGTATCTTTCGATTCGGACTCTGCGCGATTGGATTGATAAAAGATGTGTTCATAGTTTGTTTTCATGTGAAGTTGGCTTCTTTTAGTACTAACAGTTAGCAAGTTGGTTGTGTGGTTGATTTGTTCCCTTTAATACAAAGGCATAAAGTGTAGGCCTTGATTGTGTTGAGTTGCTTTTAATTGGAGTACAAGGTGACACGTTTATGGTAACACTTTTAACCATCTCTGCAATGATTTGATACTAGCAGGATACAATTGTTGATGCAATGGTTGCATGTGTCATATTTGTGCAATACCTGTACTCCCTTGCATGCATATATTATAGACTTATCGTCTCGTTCAATTCGCAGTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAACAGATGAAAGCAGGAAGAAAATTAACAAGTTTAAGGAGTCAGCATGGAAATTCGTCTATTTTCTTTCTGCAGAACTGCTATCACTGTCTGTAACATACAATGAGCCATGGTTCAAGAACACCAGAAATTTCTGGGTTGGGCCTGGTGAACAGATCTGGCCTGATCAGAAGACAAAGTGAGTGGAAAAAAAATAATCTATACCTGTGAAAAGGTTTCTGTCACACAGAGTTTTTTTTTCCTGTTTTCTACCTTATTGCAGACTCAAGCTTAAGGCTGTCTACATGTTTGCTGCTGGATTTTACACATATTCCATCTTCGCTCTTTTGTTCTGGGAAACAAGGCGGTCAGACTTTGGAGTCTCAATGTCTCACCATTTGGCAACTGTTGTTTTGATCGTTCTATCCTATATTTTCAGGTATATTCTGAACAATTTCCCAGATAAGGTAATTGTATGTATGGCATTCCAGCTCCACAAGCTATATTTAAATATTATTGTGTTTTTCGAACAGATTTGCTCGCGTTGGCTCAGTTGTTCTAGCCCTTCATGATGCTAGTGATATATTCTTAGAGATTGGGAAGATGTCCAAGTACAGTAGTTGCGAGGGGCTAGCTGTTGCAGCATTTCTTCTTTTTGTGGCTTCATGGATTCTTCTGCGTCTAATAATTTTCCCGTTCTGGATCCTAAGGAGCACAAGGTAAACTCATGCCTGCTTATATGCTGCTCTGGCATCTGGTGTTATCTACGCATCTCTAGCCATTTAGCGCTATAATCGAAAAGAGCACAACGGCACAACTACACTAGAAAGACTTTAAGAAACTTTGTTGATCAATGATCTGGTACCTTTTTCAGCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCCCATATACTACTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTTCACATATATTGGTGGGTACTAATATACCGGATGCTAGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGAATACCTGATTCCCAGACCAGATCAATTTTCAGTATCAAACATGGCAACCATGATTCACGAGTTGCTAGGAGGCTGCTTGCGCTGCCATATACTTTATGAGAAAAAGTTGATCAATGTTTTCCCCCCTTATATCCTCATTTATAAGAGAAATATGCAGGATAAGTTCGTTAATTCATTGGTTCATTCATGTAATTGTGCAGACGATTAATTAATTTACGGTGCAATCATGTAATGTTCTGTGGAACTCGATTGTAACTTGGTGTATCTTCCATTCTAATG] [+] EMBL AK067111 [ATTCTCCCGTTTGTTTCCCCACAGAAAAAGGGCGCCAGTTCATCATTCCTCGCCATCACATCCACCCGAAAAAAAACATGTCTTTTTTACTCTCTTTCTTCTTCTTCCCCCGATCCCAAATCCCTCCCTGTTCTTGCTGCTGCTCTCGAGTTGAGTGAGTTGACCCTCATCCTCCCCACCCACCCGAATCTCGCGGAGCCATTTCGCGTTCTTGGAGGAGTTGGGGAGTTTTGGTGTTTTTGGATCCGAGGAGCGTGAGAGTTCTTGGATCTCGTCGCCCTCCTCCTCCGGCAATGGCGGCGCTCGCGGAGCACCTGCTGGGTTTGTCGTCGGCGCCGGTGGACTGGGAGGCGGAGTCCTACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGGTAAAATCTGCGCATTGTCTCGTTAGATCCGAGATGCCCTTGGGATTGCAGTGTTGAACTGCTGGTGGTAGACTTGGGAGTTGTTAATGGATCGGTTTGATTATGTTAAGACTGTTAGATAAAAGGCATCTGCTTTTGGGTGTCAGAATTTTCATTTTCAATTATGCAGAGTTCTGGCGTGCAGATTTCATATGCTGTTGAAATTATGAGCATGGTGAAAATGAATGCAGTATCTTTCGATTCGGACTCTGCGCGATTGGATTGATAAAAGATGTGTTCATAGTTTGTTTTCATGTGAAGTTGGCTTCTTTTAGTACTAACAGTTAGCAAGTTGGTTGTGTGGTTGATTTGTTCCCTTTAATACAAAGGCATAAAGTGTAGGCCTTGATTGTGTTGAGTTGCTTTTAATTGGAGTACAAGGTGACACGTTTATGGTAACACTTTTAACCATCTCTGCAATGATTTGATACTAGCAGGATACAATTGTTGATGCAATGGTTGCATGTGTCATATTTGTGCAATACCTGTACTCCCTTGCATGCATATATTATAGACTTATCGTCTCGTTCAATTCGCAGTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAACAGATGAAAGCAGGAAGAAAATTAACAAGTTTAAGGAGTCAGCATGGAAATTCGTCTATTTTCTTTCTGCAGAACTGCTATCACTGTCTGTAACATACAATGAGCCATGGTTCAAGAACACCAGAAATTTCTGGGTTGGGCCTGGTGAACAGATCTGGCCTGATCAGAAGACAAAGTGAGTGGAAAAAAAATAATCTATACCTGTGAAAAGGTTTCTGTCACACAGAGTTTTTTTTTCCTGTTTTCTACCTTATTGCAGACTCAAGCTTAAGGCTGTCTACATGTTTGCTGCTGGATTTTACACATATTCCATCTTCGCTCTTTTGTTCTGGGAAACAAGGCGGTCAGACTTTGGAGTCTCAATGTCTCACCATTTGGCAACTGTTGTTTTGATCGTTCTATCCTATATTTTCAGGTATATTCTGAACAATTTCCCAGATAAGGTAATTGTATGTATGGCATTCCAGCTCCACAAGCTATATTTAAATATTATTGTGTTTTTCGAACAGATTTGCTCGCGTTGGCTCAGTTGTTCTAGCCCTTCATGATGCTAGTGATATATTCTTAGAGATTGGGAAGATGTCCAAGTACAGTAGTTGCGAGGGGCTAGCTGTTGCAGCATTTCTTCTTTTTGTGGCTTCATGGATTCTTCTGCGTCTAATAATTTTCCCGTTCTGGATCCTAAGGAGCACAAGGTAAACTCATGCCTGCTTATATGCTGCTCTGGCATCTGGTGTTATCTACGCATCTCTAGCCATTTAGCGCTATAATCGAAAAGAGCACAACGGCACAACTACACTAGAAAGACTTTAAGAAACTTTGTTGATCAATGATCTGGTACCTTTTTCAGCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCCCATATACTACTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTTCACATATATTGGTGGGTACTAATATACCGGATGCTAGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGAATACCTGATTCCCAGACCAGATCAATTTTCAGTATCAAACATGGCAACCATGATTCACGAGTTGCTAGGAGGCTGCTTGCGCTGCCATATACTTTATGAGAAAAAGTTGATCAATGTTTTCCCCCCTTATATCCTCATTTATAAGAGAAATATGCAGGATAAGTTCGTTAATTCATTGGTTCATTCATGTAATTGTGCAGACGATTAATTAATTTACGGTGCAATCATGTAATGTTCTGTGGAACTCGATTGTAACTTGGTGTATCTTCCATTCTAATG] consensusID : consensus_2045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [CAAGTTACAATCGAGTTCCACAGAACATTACATGATTGGACCGGAAATTAATTAATCGTCTGGACACATTACAAGAATGAACCAATGGAGATTCAACGCACACTTCATCCTATGCGATATTTTCCTCCTATATCAAC] [+] EMBL BU667304 [CAAGTTACAATCGAGTTCCACAGAACATTACATGATTGGACCGGAAATTAATTAATCGTCTGGACACATTACAAGAATGAACCAATGGAGATTCAACGCACACTTCATCCTATGCGATATTTTCCTCCTATATCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2045#0 ATTCTCCCGTTTGTTTCCCCACAGAAAAAGGGCGCCAGTTCATCATTCCTCGCCATCACA 60 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TCCACCCGAAAAAAAACATGTCTTTTTTACTCTCTTTCTTCTTCTTCCCCCGATCCCAAA 120 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TCCCTCCCTGTTCTTGCTGCTGCTCTCGAGTTGAGTGAGTTGACCCTCATCCTCCCCACC 180 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CACCCGAATCTCGCGGAGCCATTTCGCGTTCTTGGAGGAGTTGGGGAGTTTTGGTGTTTT 240 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TGGATCCGAGGAGCGTGAGAGTTCTTGGATCTCGTCGCCCTCCTCCTCCGGCAATGGCGG 300 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CGCTCGCGGAGCACCTGCTGGGTTTGTCGTCGGCGCCGGTGGACTGGGAGGCGGAGTCCT 360 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 ACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCC 420 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 GCTTCCTCCTCGACCGCTTCGTCTTCGAGGTAAAATCTGCGCATTGTCTCGTTAGATCCG 480 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 AGATGCCCTTGGGATTGCAGTGTTGAACTGCTGGTGGTAGACTTGGGAGTTGTTAATGGA 540 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TCGGTTTGATTATGTTAAGACTGTTAGATAAAAGGCATCTGCTTTTGGGTGTCAGAATTT 600 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TCATTTTCAATTATGCAGAGTTCTGGCGTGCAGATTTCATATGCTGTTGAAATTATGAGC 660 consensus_2045#1 ----------------CAAGTTACAAT---CGAGTTCCACAGAACATTA----CATGATT 37 **** * ** ** * ** **** consensus_2045#0 ATGGTGAAAATGAATGCAGTATCTTTCGATTCGGACTCTGCGCGATTGGATTGATAAAAG 720 consensus_2045#1 GGACCGGAAATTAATTAATCGTCTG--GAC----ACATTACAAGAATGAACCAATGGAGA 91 * **** *** * *** ** ** * * ** ** * ** * consensus_2045#0 ATGTGTTCATAGTTTGTTTTCATGTGAAGTTGGCTTCTTTTAGTACTAACAGTTAGCAAG 780 consensus_2045#1 TTCAACGCACACTTCATCCT-ATGCGATATT---TTCCTCCTATATCAAC---------- 137 * ** * ** * * *** ** ** *** * ** *** consensus_2045#0 TTGGTTGTGTGGTTGATTTGTTCCCTTTAATACAAAGGCATAAAGTGTAGGCCTTGATTG 840 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TGTTGAGTTGCTTTTAATTGGAGTACAAGGTGACACGTTTATGGTAACACTTTTAACCAT 900 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CTCTGCAATGATTTGATACTAGCAGGATACAATTGTTGATGCAATGGTTGCATGTGTCAT 960 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 ATTTGTGCAATACCTGTACTCCCTTGCATGCATATATTATAGACTTATCGTCTCGTTCAA 1020 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TTCGCAGTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAAC 1080 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 AGATGAAAGCAGGAAGAAAATTAACAAGTTTAAGGAGTCAGCATGGAAATTCGTCTATTT 1140 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TCTTTCTGCAGAACTGCTATCACTGTCTGTAACATACAATGAGCCATGGTTCAAGAACAC 1200 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CAGAAATTTCTGGGTTGGGCCTGGTGAACAGATCTGGCCTGATCAGAAGACAAAGTGAGT 1260 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 GGAAAAAAAATAATCTATACCTGTGAAAAGGTTTCTGTCACACAGAGTTTTTTTTTCCTG 1320 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TTTTCTACCTTATTGCAGACTCAAGCTTAAGGCTGTCTACATGTTTGCTGCTGGATTTTA 1380 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CACATATTCCATCTTCGCTCTTTTGTTCTGGGAAACAAGGCGGTCAGACTTTGGAGTCTC 1440 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 AATGTCTCACCATTTGGCAACTGTTGTTTTGATCGTTCTATCCTATATTTTCAGGTATAT 1500 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TCTGAACAATTTCCCAGATAAGGTAATTGTATGTATGGCATTCCAGCTCCACAAGCTATA 1560 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TTTAAATATTATTGTGTTTTTCGAACAGATTTGCTCGCGTTGGCTCAGTTGTTCTAGCCC 1620 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TTCATGATGCTAGTGATATATTCTTAGAGATTGGGAAGATGTCCAAGTACAGTAGTTGCG 1680 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 AGGGGCTAGCTGTTGCAGCATTTCTTCTTTTTGTGGCTTCATGGATTCTTCTGCGTCTAA 1740 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TAATTTTCCCGTTCTGGATCCTAAGGAGCACAAGGTAAACTCATGCCTGCTTATATGCTG 1800 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CTCTGGCATCTGGTGTTATCTACGCATCTCTAGCCATTTAGCGCTATAATCGAAAAGAGC 1860 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 ACAACGGCACAACTACACTAGAAAGACTTTAAGAAACTTTGTTGATCAATGATCTGGTAC 1920 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CTTTTTCAGCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCC 1980 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CATATACTACTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTTCACATATATTG 2040 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 GTGGGTACTAATATACCGGATGCTAGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGA 2100 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TGATGTTCGATCTGATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAAT 2160 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 GCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGAATACCT 2220 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 GATTCCCAGACCAGATCAATTTTCAGTATCAAACATGGCAACCATGATTCACGAGTTGCT 2280 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 AGGAGGCTGCTTGCGCTGCCATATACTTTATGAGAAAAAGTTGATCAATGTTTTCCCCCC 2340 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 TTATATCCTCATTTATAAGAGAAATATGCAGGATAAGTTCGTTAATTCATTGGTTCATTC 2400 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 ATGTAATTGTGCAGACGATTAATTAATTTACGGTGCAATCATGTAATGTTCTGTGGAACT 2460 consensus_2045#1 ------------------------------------------------------------ consensus_2045#0 CGATTGTAACTTGGTGTATCTTCCATTCTAATG 2493 consensus_2045#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||