These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [GCACAGAAACTATCTTAAATTTGAGGTTTACACAATGCTAATTCTCAGTATCGAAATATATAGTTCTAGTGTTAACCNAAAACGACGGCCAACATCACGAAGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAGAAAAATCAACCTATTGCTGCTGAAAGCCTAGAACTATCAAAAACCTTGAGAGATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGCATAAGAGAAGCCATTTCATAAACCACAATCATAGGAGCAATTGAAGNCATCTTTAAAAATATTCTAAGGGATTTTTGATATTTTCCAGGAAGTACTCCTGATATCGTCTACATATATCACTGTATATTCCCCATATTAGTTTTACAATATATTATTAGTGACTCCACAAAAGAAGTGTCCCAAATTCCAAAAACACACATCAGACGGTACTCACATGCAAAACTATTTGAACGCCACTAGGCCATTCAGGAGAAGCTATAACTTCTTNCAACAGTCGTTAAAACCGNGCCTAAATAAACAATTGGGGAGATATGAAAAGTGCAGTAGAGCAACAAGGATGCTAGAANTATCATGAGNTGATAATGCATGATTAGTCCAAGNTCATGNCCAATATATAATATTTACCATCAGCTGGATTTCAAGGAGTAAACTAAGTCCTCAAAAATGGGNATAACAGCTA] [+] EMBL CA764739 [GCACAGAAACTATCTTAAATTTGAGGTTTACACAATGCTAATTCTCAGTATCGAAATATATAGTTCTAGTGTTAACCNAAAACGACGGCCAACATCACGAAGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAGAAAAATCAACCTATTGCTGCTGAAAGCCTAGAACTATCAAAAACCTTGAGAGATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGCATAAGAGAAGCCATTTCATAAACCACAATCATAGGAGCAATTGAAGNCATCTTTAAAAATATTCTAAGGGATTTTTGATATTTTCCAGGAAGTACTCCTGATATCGTCTACATATATCACTGTATATTCCCCATATTAGTTTTACAATATATTATTAGTGACTCCACAAAAGAAGTGTCCCAAATTCCAAAAACACACATCAGACGGTACTCACATGCAAAACTATTTGAACGCCACTAGGCCATTCAGGAGAAGCTATAACTTCTTNCAACAGTCGTTAAAACCGNGCCTAAATAAACAATTGGGGAGATATGAAAAGTGCAGTAGAGCAACAAGGATGCTAGAANTATCATGAGNTGATAATGCATGATTAGTCCAAGNTCATGNCCAATATATAATATTTACCATCAGCTGGATTTCAAGGAGTAAACTAAGTCCTCAAAAATGGGNATAACAGCTA] consensusID : consensus_2064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TTTTTTATCGAAATATATAGTTATAGTGTTAACCAAAAACGACGGCCAACATCACGAAGGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAAAAAAATCAACCTATGGCTGCTGAAAGCCTAGTACTATCAAAAGCCTTGAGAGATGCATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGATATATGCACACGATTACATTAACTCCCTGTATCCTGACCTGGAAGTTTCTTCCCAGTGTTCTTATCAGCAAGTTTGTTCCCGAGTAGTGTAAGGATGTGAAAATGCGCCGGAGCATTAAATTTCTGTTTAATGATTCCTTCCACACGATGAACTGTAGTATAAAAGGTAAGAAGCTTGGTGTTTTCCGCAATGCAGCTTCAGCTTCTTC] [-] EMBL BI812236 [TTTTTTATCGAAATATATAGTTATAGTGTTAACCAAAAACGACGGCCAACATCACGAAGGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAAAAAAATCAACCTATGGCTGCTGAAAGCCTAGTACTATCAAAAGCCTTGAGAGATGCATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGATATATGCACACGATTACATTAACTCCCTGTATCCTGACCTGGAAGTTTCTTCCCAGTGTTCTTATCAGCAAGTTTGTTCCCGAGTAGTGTAAGGATGTGAAAATGCGCCGGAGCATTAAATTTCTGTTTAATGATTCCTTCCACACGATGAACTGTAGTATAAAAGGTAAGAAGCTTGGTGTTTTCCGCAATGCAGCTTCAGCTTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2064#0 GCACAGAAACTATCTTAAATTTGAGGTTTACACAATGCTAATTCTCAGTATCGAAATATA 60 consensus_2064#1 -------------------------------------------TTTTTTATCGAAATATA 17 * ************ consensus_2064#0 TAGTTCTAGTGTTAACCNAAAACGACGGCCAACATCACGAAG-TGCTCTGCTTCATCACA 119 consensus_2064#1 TAGTTATAGTGTTAACCAAAAACGACGGCCAACATCACGAAGGTGCTCTGCTTCATCACA 77 ***** *********** ************************ ***************** consensus_2064#0 ACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTC 179 consensus_2064#1 ACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTC 137 ************************************************************ consensus_2064#0 AGGAGTTCCAGATTATCCTTACAGAAAAATCAACCTATTGCTGCTGAAAGCCTAGAACTA 239 consensus_2064#1 AGGAGTTCCAGATTATCCTTACAAAAAAATCAACCTATGGCTGCTGAAAGCCTAGTACTA 197 *********************** ************** **************** **** consensus_2064#0 TCAAAAACCTTGAGAGATGCA----ACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCT 295 consensus_2064#1 TCAAAAGCCTTGAGAGATGCATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCT 257 ****** ************** *********************************** consensus_2064#0 TGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGCATAAGAGAAGCCATTTCA 355 consensus_2064#1 TGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGATATATGCACACGATTACA 317 ***************************************** * * * *** ** consensus_2064#0 TAAACCACAATCATAGGAGCAATTGAAGNCATCTTTAAAAATATTCTAAGGGATTTTTGA 415 consensus_2064#1 TTAACTCC--CTGTATCCTGACCTGGAAGTTTCTTCCCAG-TGTTCT-------TATCAG 367 * *** * ** * ** * **** * * **** * * consensus_2064#0 TATTTTCCAGGAAGTACTCCTGATATCGTCTACATATATCACTGTATATTCCCCATATTA 475 consensus_2064#1 CAAGTT--------TGTTCCCGA-GTAGTGTAAGGATGT----GAAAATGCGCCGGAGCA 414 * ** * *** ** * ** ** ** * * * ** * ** * * consensus_2064#0 GTTTTACAATATATTATTAGTGACTCCACAAAAGAAGTGTCCCAAATTCCAAAAACACAC 535 consensus_2064#1 ---TTA-AATTTCTGTTTAATGATTCCTTCCACACGATGAACTGTAGTATAAAAG-GTAA 469 *** *** * * *** *** *** * ** * * * **** * consensus_2064#0 ATCAGACGGTACTCACATGCAAAACTATTTGAACGCCACTAGGCCATTCAGGAGAAGCTA 595 consensus_2064#1 GAAGCTTGGTGTTTTC-CGCAATGCAGCTTCAGCTTCTTC-------------------- 508 *** * * **** * ** * * * consensus_2064#0 TAACTTCTTNCAACAGTCGTTAAAACCGNGCCTAAATAAACAATTGGGGAGATATGAAAA 655 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 GTGCAGTAGAGCAACAAGGATGCTAGAANTATCATGAGNTGATAATGCATGATTAGTCCA 715 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 AGNTCATGNCCAATATATAATATTTACCATCAGCTGGATTTCAAGGAGTAAACTAAGTCC 775 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 TCAAAAATGGGNATAACAGCTA 797 consensus_2064#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||