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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 858 fasta sequence
[CAGGAAGACGAACTGAAGCTCCGGATGAAGATCGAGGATACCAGGAGGGATTATGGGAAGAAGAGGAGGCAATTCGATGACTGGGCACAAAAGTACATGCACCAAACTGCGGGTATCCTTCCTGAGGACAGGAACCCTGACGGTGCACGCCCCGATCCAATGGCGGAACGGAAGGCTGCCATGGAAAAGTTGGAGCTTTCTATGAAGGAGCTGGAGGAGATGTATGTCAAGCAGTGCAGGGTGGTCAGGGAGAAGTCCCTCAGCCTTCTCAGGACGAATTTGCCGGAGCTGTTCAGAGTTGTGTCGGATTTCTCACTTCAGTCAGCTGGGATGTTCAAGGGCGTGTGGTCGATTGCACACACCAATGACCAACTGGATGAATAATATAAGTTCTTTTGTTGTTGTAATCTTTCTTTCTTTTTGTTTATGTTGATAGGTTGATTAGTTGTTGTATATTGATTTTTGGCTTGTGGTGCCGAGATTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACTGTTGTTAAAATTCGTAGTATAGGTATAGGGAGTTTTACTTTTNACATTACATGGTGTTTGAAAGAGGGAACTGTATNTTTTTGTTTCATATTTGATAAATATTGGTAGGCTTTATCNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNAANNCCTCGGGGGGGGGGCCCCGGACCCCAATTCCCCTTATGGGGAGGTCGATTTACCGCCGCTCCTGGCCCGTGGTTAAAACGTGGGGAACTGGAAAACCCTTGGGGTTCCCAACTTAATTGCTTGAAACACATCCCCTTTGCCACTGGGGAAAAAAACAAAAAGGCCC]
[+] EMBL CA758205 [CAGGAAGACGAACTGAAGCTCCGGATGAAGATCGAGGATACCAGGAGGGATTATGGGAAGAAGAGGAGGCAATTCGATGACTGGGCACAAAAGTACATGCACCAAACTGCGGGTATCCTTCCTGAGGACAGGAACCCTGACGGTGCACGCCCCGATCCAATGGCGGAACGGAAGGCTGCCATGGAAAAGTTGGAGCTTTCTATGAAGGAGCTGGAGGAGATGTATGTCAAGCAGTGCAGGGTGGTCAGGGAGAAGTCCCTCAGCCTTCTCAGGACGAATTTGCCGGAGCTGTTCAGAGTTGTGTCGGATTTCTCACTTCAGTCAGCTGGGATGTTCAAGGGCGTGTGGTCGATTGCACACACCAATGACCAACTGGATGAATAATATAAGTTCTTTTGTTGTTGTAATCTTTCTTTCTTTTTGTTTATGTTGATAGGTTGATTAGTTGTTGTATATTGATTTTTGGCTTGTGGTGCCGAGATTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACTGTTGTTAAAATTCGTAGTATAGGTATAGGGAGTTTTACTTTTNACATTACATGGTGTTTGAAAGAGGGAACTGTATNTTTTTGTTTCATATTTGATAAATATTGGTAGGCTTTATCNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNAANNCCTCGGGGGGGGGGCCCCGGACCCCAATTCCCCTTATGGGGAGGTCGATTTACCGCCGCTCCTGGCCCGTGGTTAAAACGTGGGGAACTGGAAAACCCTTGGGGTTCCCAACTTAATTGCTTGAAACACATCCCCTTTGCCACTGGGGAAAAAAACAAAAAGGCCC]
consensusID : consensus_2080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence
[AATTCTTTTTCTTTTTCTCTTTNTTTGGCTTTTTATCGTTTTNCACCTATCGGTNTTTTGACTTAGTTTTGTTTTGCTANTATTTGGANTCTTTTTTGCGCTTTGTGGTGCCGAGACTTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACCTGTTGCTTAAAAATTCGTAGTATAGACTAATAGGACGTTTTAACTTTTACCACTTACCACTGGTATTTGAAAGAGGGAACTGTATTTTTTGTTTCATATTTGATAAATATTGTAGGCTTTATCCAAAAAAAAAAA]
[+] EMBL BQ908797 [AATTCTTTTTCTTTTTCTCTTTNTTTGGCTTTTTATCGTTTTNCACCTATCGGTNTTTTGACTTAGTTTTGTTTTGCTANTATTTGGANTCTTTTTTGCGCTTTGTGGTGCCGAGACTTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACCTGTTGCTTAAAAATTCGTAGTATAGACTAATAGGACGTTTTAACTTTTACCACTTACCACTGGTATTTGAAAGAGGGAACTGTATTTTTTGTTTCATATTTGATAAATATTGTAGGCTTTATCCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2080#0 CAGGAAGACGAACTGAAGCTCCGGATGAAGATCGAGGATACCAGGAGGGATTATGGGAAG 60
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 AAGAGGAGGCAATTCGATGACTGGGCACAAAAGTACATGCACCAAACTGCGGGTATCCTT 120
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 CCTGAGGACAGGAACCCTGACGGTGCACGCCCCGATCCAATGGCGGAACGGAAGGCTGCC 180
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 ATGGAAAAGTTGGAGCTTTCTATGAAGGAGCTGGAGGAGATGTATGTCAAGCAGTGCAGG 240
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 GTGGTCAGGGAGAAGTCCCTCAGCCTTCTCAGGACGAATTTGCCGGAGCTGTTCAGAGTT 300
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 GTGTCGGATTTCTCACTTCAGTCAGCTGGGATGTTCAAGGGCGTGTGGTCGATTGCACAC 360
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 ACCAATGACCAACTGGATGAATAATATAAGTTCTTTTGTTGTTGTA-ATCTTTCTTTCTT 419
consensus_2080#1 ---AATTCTTTTTCTTTTTCTCTTTNTTTGGCTTTTTATCGTTTTNCACCTATCGGTNTT 57
*** * * * * **** * *** * * ** ** * **
consensus_2080#0 TTTGTTTATGTTGATAGGTTGATTAGTTGTTGTATATTGATTTTTGGCTTGTGGTGCCGA 479
consensus_2080#1 TTGACTTAGTTTTGT---TTTGCTANTATTTGGANTCTTTTTTGCGCTTTGTGGTGCCGA 114
** *** ** * ** ** * *** * * *** * ************
consensus_2080#0 GA-TTAAAAAAAAAAAGAATGATCCTTTTTGAGCTAC-TGTTGTT--AAAATTCGTAGTA 535
consensus_2080#1 GACTTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACCTGTTGCTTAAAAATTCGTAGTA 174
** ********************************** ***** * *************
consensus_2080#0 TAGGT--ATAGGGAGTTTTACTTTTNACA--TTACA--TGGTGTTTGAAAGAGGGAACTG 589
consensus_2080#1 TAGACTAATAGGACGTTTTAACTTTTACCACTTACCACTGGTATTTGAAAGAGGGAACTG 234
*** ***** ****** *** ** **** **** *****************
consensus_2080#0 TATNTTTTTGTTTCATATTTGATAAATATTGGTAGGCTTTATCNNNNNNNANNNNNNNNN 649
consensus_2080#1 TATTTTTT-GTTTCATATTTGATAAATATTG-TAGGCTTTATCCAAAAAAAAAAA----- 287
*** **** ********************** *********** *
consensus_2080#0 NNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNAANNCCTCGGGGGGGGGGCCC 709
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 CGGACCCCAATTCCCCTTATGGGGAGGTCGATTTACCGCCGCTCCTGGCCCGTGGTTAAA 769
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 ACGTGGGGAACTGGAAAACCCTTGGGGTTCCCAACTTAATTGCTTGAAACACATCCCCTT 829
consensus_2080#1 ------------------------------------------------------------
consensus_2080#0 TGCCACTGGGGAAAAAAACAAAAAGGCCC 858
consensus_2080#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||