These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [CAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTCTGAAACCGGATAGCTTCATCCTGAGTGCTGCATTTCATCTCTATGAACATTCAGGCAGGGAGTCTGAAGCTGGGGATGTCCTAGATGCCATCAATATGAGTGGTGCCTCTTTCTTGCGTAATCCTAAAGGTTGGATCCAAGTTGGAGCAAGTGAGAAATGATACACATGCATCTTGAACCAGCTGTGAGTATCATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCAATATAAACCAGTATTAATAACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGCTAGTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAGATTCGTATTATTGTATATCGAACTTTTACACTCGATTACAATGCACCAGAATTAAATTTAAAAAAAAAA] [+] EMBL BQ908100 [CAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTCTGAAACCGGATAGCTTCATCCTGAGTGCTGCATTTCATCTCTATGAACATTCAGGCAGGGAGTCTGAAGCTGGGGATGTCCTAGATGCCATCAATATGAGTGGTGCCTCTTTCTTGCGTAATCCTAAAGGTTGGATCCAAGTTGGAGCAAGTGAGAAATGATACACATGCATCTTGAACCAGCTGTGAGTATCATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCAATATAAACCAGTATTAATAACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGCTAGTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAGATTCGTATTATTGTATATCGAACTTTTACACTCGATTACAATGCACCAGAATTAAATTTAAAAAAAAAA] consensusID : consensus_2101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [ATTATATTCCAAGAAATGCAGAAAAACAATCATGTGCCTGATTCGCACACATATCTTGCTTTGATCAGAGCATACACTGAGGGTAAATGCTACTCCAAAGCTGAGGAAGCCATCCAGATGATGCTGAGAAGCAACATGACCCCTTCATGCACTCATTTCAACCATCTCATTTCCGCCTTTCTGAAGGAAGGTCAGATTGATGAAGCCCAGAGGATGTACAACCAAATGGAGGAGGCAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTTTGAACCCGCATACCCTATTCGTGAGCCAAGCATTTCACCTTTAATACCATTCAGGCGGGGAATGTTAACAGGGGGACGT] [-] EMBL CB628190 [ATTATATTCCAAGAAATGCAGAAAAACAATCATGTGCCTGATTCGCACACATATCTTGCTTTGATCAGAGCATACACTGAGGGTAAATGCTACTCCAAAGCTGAGGAAGCCATCCAGATGATGCTGAGAAGCAACATGACCCCTTCATGCACTCATTTCAACCATCTCATTTCCGCCTTTCTGAAGGAAGGTCAGATTGATGAAGCCCAGAGGATGTACAACCAAATGGAGGAGGCAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTTTGAACCCGCATACCCTATTCGTGAGCCAAGCATTTCACCTTTAATACCATTCAGGCGGGGAATGTTAACAGGGGGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2101#0 CAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACG 60 consensus_2101#1 -----------------------------------------ATTATATTCCAAGAAATGC 19 * ** * ** consensus_2101#0 GTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTCTGAAACCGGATA 120 consensus_2101#1 AGAAAAACAATCATG-TGCCTGATTCGCACACATATCTTG----CTTTGATCAGAGCATA 74 * * ** *** ** *** * * * ** *** * * *** consensus_2101#0 GCTTCATCCTGAGTGCTGCATTTCATCTCTATGAACATTCAGGCAGGGAGTCTGAAGCTG 180 consensus_2101#1 CACTGAGGGTAAATGCTACTCCAAAGCTGAGGAAGCCATCCAGATGATGCTGAGAAGCAA 134 * * * * **** * * ** * * ** * * * ***** consensus_2101#0 GGGATGTCCTAGATGCCATCAATATGAGTGGTGCCTCTTTCTTGCGTAATCCTAAAGGTT 240 consensus_2101#1 CATGACCCCTTCATGCACTCATTTCAAC-----CATCTCATTTCCGCCTTTCTGAAGGAA 189 *** **** *** * * * *** ** ** * ** **** consensus_2101#0 GGATCCAAGTTGGAGCAAGTGAGAAATGATACACATGCATCTTGAACCAGCTGTGAGTAT 300 consensus_2101#1 GG--TCAGATTGATGAAGCCCAGAG--GATGTACAACCAAATGGAGGAGGCAG-GCATAC 244 ** ** *** * * *** *** *** ** * ** ** * * ** consensus_2101#0 CATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCAATATAAACCAGTATTAAT 360 consensus_2101#1 C-TGCTGACTTGGCATGTTGTCGGA--CGATGATGAGGATGCATCTGGATCACGGTTAC- 300 * ** * * * *** * ** * * * ** * * ** *** consensus_2101#0 AACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGC 420 consensus_2101#1 -GTCGATGATGGCATCTTGTTCTTC-GAAACGGCATGTCG----------ACTTTTGAAC 348 *** * * * ** ** ** * * ** * * ***** * consensus_2101#0 TAGTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAGATTCGTATTATT-GTATAT 479 consensus_2101#1 CCGCATACCCTA----TTCGTGAGCCAAGCATTTCACCT---TTAATACCATTCAGGCGG 401 * ** * *** * * ** ** * ** ** *** consensus_2101#0 CGAACTTTTACACTCGATTACAATGCACCAGAATTAAATTTAAAAAAAAAA 530 consensus_2101#1 GGAATGTTAACAGGGGGACGT------------------------------ 422 *** ** *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||