|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CTTTTTTTTTAAACTGTCTTAATGTCTTACCACCGTGCCACCGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATGAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAAGATGTCAGAAGAGGATATCCGGAAATTATGCACACATCGCCTTTCCAAAATTTTGTACATGACACAGTTTTCATTTGTCCAACGATGAAATGCCATATATCAGATAGAGATAGGCCTGCAACTCTCATGCAAATGAATGCTAGCAAATCGTGGCATGCAGGTCTGCTAGTCTGCTACTGCATCGAAGTTGGAACTTGGAACACAAACTCAAGGTCATCCATGCAAGGGCACTTCAAATTCAGACGGACCTCCCACTATTGTGCACTGAAGCCTGAAGCCGGCAACACTGGAAAAATCGGGAGCACTGGCATGTCACTAACAAACCTGCAGTCGGATGATACTATGGGGACAATTTCTTAGCGATATGCTTAAGGACCGCAACACAATGTCCTGACATTAGAAGC]
[+] EMBL CB634879 [CTTTTTTTTTAAACTGTCTTAATGTCTTACCACCGTGCCACCGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATGAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAAGATGTCAGAAGAGGATATCCGGAAATTATGCACACATCGCCTTTCCAAAATTTTGTACATGACACAGTTTTCATTTGTCCAACGATGAAATGCCATATATCAGATAGAGATAGGCCTGCAACTCTCATGCAAATGAATGCTAGCAAATCGTGGCATGCAGGTCTGCTAGTCTGCTACTGCATCGAAGTTGGAACTTGGAACACAAACTCAAGGTCATCCATGCAAGGGCACTTCAAATTCAGACGGACCTCCCACTATTGTGCACTGAAGCCTGAAGCCGGCAACACTGGAAAAATCGGGAGCACTGGCATGTCACTAACAAACCTGCAGTCGGATGATACTATGGGGACAATTTCTTAGCGATATGCTTAAGGACCGCAACACAATGTCCTGACATTAGAAGC]
consensusID : consensus_2102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[TGAACTAAATATAAACTGTCTTAATGTCTTACCACCGTGCCACGGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATAAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAGATGTCAGAAGAGGATATCCGGGAAATTATGGCACACATCGNCCTTTTCCAAAATTTGTTACCATGNACACAGGTTTTCCATTTGGTCCAACGNTNGGNAATGGCCCATTATNTNCAGGNTANGGGNNANGGGCTGGNNAANTCNTNATGGCCAAATGGATGGNCTAGCCAATTCGGTGGGCCATTGCNNGGGCTGNNAANGTTNGNGAACNGGCTTCCGAGTTGGGGANCTTGGNAANNNCAAANTNNAGGGGGNCCCANNAAGGGGGCCTTNAAATTTTGGAANGGGGNNCCCCCCCNCNTTTNGGGNCCTTTAANCCTTAAGGGNG]
[+] EMBL BE229012 [TGAACTAAATATAAACTGTCTTAATGTCTTACCACCGTGCCACGGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATAAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAGATGTCAGAAGAGGATATCCGGGAAATTATGGCACACATCGNCCTTTTCCAAAATTTGTTACCATGNACACAGGTTTTCCATTTGGTCCAACGNTNGGNAATGGCCCATTATNTNCAGGNTANGGGNNANGGGCTGGNNAANTCNTNATGGCCAAATGGATGGNCTAGCCAATTCGGTGGGCCATTGCNNGGGCTGNNAANGTTNGNGAACNGGCTTCCGAGTTGGGGANCTTGGNAANNNCAAANTNNAGGGGGNCCCANNAAGGGGGCCTTNAAATTTTGGAANGGGGNNCCCCCCCNCNTTTNGGGNCCTTTAANCCTTAAGGGNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2102#0 --CTTTTTTTTTAAACTGTCTTAATGTCTTACCACCGTGCCACCGTTGACAAGTACGTAC 58
consensus_2102#1 TGAACTAAATATAAACTGTCTTAATGTCTTACCACCGTGCCACGGTTGACAAGTACGTAC 60
* * ******************************** ****************
consensus_2102#0 ATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTT 118
consensus_2102#1 ATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTT 120
************************************************************
consensus_2102#0 TATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATC 178
consensus_2102#1 TATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATC 180
************************************************************
consensus_2102#0 TCTGGTTTATTATGAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCT 238
consensus_2102#1 TCTGGTTTATTATAAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCT 240
************* **********************************************
consensus_2102#0 GGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAAGATGTCAGAAGA 298
consensus_2102#1 GGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAA-GATGTCAGAAGA 299
*********************************************** ************
consensus_2102#0 GGATATCCGG-AAATTATG-CACACATCGCC--TTTCCAAAATTTTGTAC-ATGA-CACA 352
consensus_2102#1 GGATATCCGGGAAATTATGGCACACATCGNCCTTTTCCAAAATTTGTTACCATGNACACA 359
********** ******** ********* * ************ *** *** ****
consensus_2102#0 G--TTTTCATTTG-TCCAACGATGAAATGCCATATATCAGATAGAGATAGGCCTGCAACT 409
consensus_2102#1 GGTTTTCCATTTGGTCCAACGNTNGGNAATGGCCCATTATNTNCAGGNTANGG-GNNANG 418
* *** ****** ******* * ** * * ** * *
consensus_2102#0 CTCATGCAAATGAATGCTAGCAAATCGTGGCATGCAGGTCTGCTAGTCTGCTACTGCATC 469
consensus_2102#1 GGCTGGNNAANTCNTNATGGCCAAATGGATGGNCTAGCCAATTCGGTGGGCCATTGCNNG 478
* * ** * * ** ** * ** ** ** * ***
consensus_2102#0 GAAGTTGGAACTTGGAACACAAACTCAAGGTCATCCATGCAAGGGCACTTCAAATTCAGA 529
consensus_2102#1 GGCTGNNAANGTTNGNGAACNGGCTTCCGAGTTGGGGANCTTGGNAANNNCAAANTNNAG 538
* * ** * ** ** * * ** * **** *
consensus_2102#0 CGGACCTCCCACTATTGTGCACTGAAGCCTGAAGCCGGCAACACTGGAAAAATCGGGAGC 589
consensus_2102#1 GGGGNCCCANNAAGGGGGCCTTNAAATTTTGGAANGGGGNNCCCCCCCNCNTTTNGGGNC 598
** * * * * ** ** * ** * * * ** *
consensus_2102#0 ACTGGCATGTCACTAACAAACCTGCAGTCGGATGATACTATGGGGACAATTTCTTAGCGA 649
consensus_2102#1 CTTTAANCCTTAAGGGNG------------------------------------------ 616
* * *
consensus_2102#0 TATGCTTAAGGACCGCAACACAATGTCCTGACATTAGAAGC 690
consensus_2102#1 -----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||