These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1657 fasta sequence [TCGCACAGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGGCGACACCGACTTCGACGACGACGACGACGACGACCCCTTCGCTGACGCCATCTCGGGGGCCGGTGGCGAGCGGCGGCGCACTCCCTCTTCTTCCGAGGAGGCGGAGGCGGAGGCGGAGGCTGATGATGAGGGGGAGGATGGTGGTGAGGGTGGGGAGGAGGAGGATGAGGAGAATCTGAAGATCTGGGAGGAGAAGAGGAAGGTGAAGGCGGCGGCGGCGGTGGCGGCGAGTGGGGCTGAGCGGGCGAGGGAGGCGGAGACGCTCATGGCGGAGGTGTTCGACGCGGTCTCCGGCGTGCGCCGCGCGTACTCTGACCTCCAGGGGGCACACTGCCCCTGGGACCCCGACAAGATGCGGAGCGCCGACGCCGCCGTCGTCGCCAAGCTCCGCCACCTCGCGCGGCTCCGCGACCGCTTCCGCCGCTCCGTCGCCACGGGGGGGCACATCCCCGGCCCCATCCCCACCGCGCCGCCGCTCCGCGAGGCCGTCGCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGAAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAAC] [+] EMBL AK121566 [TCGCACAGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGGCGACACCGACTTCGACGACGACGACGACGACGACCCCTTCGCTGACGCCATCTCGGGGGCCGGTGGCGAGCGGCGGCGCACTCCCTCTTCTTCCGAGGAGGCGGAGGCGGAGGCGGAGGCTGATGATGAGGGGGAGGATGGTGGTGAGGGTGGGGAGGAGGAGGATGAGGAGAATCTGAAGATCTGGGAGGAGAAGAGGAAGGTGAAGGCGGCGGCGGCGGTGGCGGCGAGTGGGGCTGAGCGGGCGAGGGAGGCGGAGACGCTCATGGCGGAGGTGTTCGACGCGGTCTCCGGCGTGCGCCGCGCGTACTCTGACCTCCAGGGGGCACACTGCCCCTGGGACCCCGACAAGATGCGGAGCGCCGACGCCGCCGTCGTCGCCAAGCTCCGCCACCTCGCGCGGCTCCGCGACCGCTTCCGCCGCTCCGTCGCCACGGGGGGGCACATCCCCGGCCCCATCCCCACCGCGCCGCCGCTCCGCGAGGCCGTCGCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGAAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAAC] consensusID : consensus_211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1427 fasta sequence [AGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGGAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAACCATTTAGTCTACTTACTGTTCTATTTAGCATTTTAGCAACCTCTTATCTGAAGTAATCCATGGGTAAGAGAATTGGGTGTATGATCATGTTGTACTATTACTATTATTTAGTCAAAGTAGGGGTTGGTACTGGAGTATTAGCTGGGTCATGTGTACTATCAGTATGATCATCGCAAGATGTGGGCTTGAGTATGATGGATAATTAAGAAGGCACTCTATCATTCAGAAGATGTGGTAGTAGTTGTCACATGACATCAAAGAAGTACTATC] [+] EMBL AK063312 [AGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGGAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAACCATTTAGTCTACTTACTGTTCTATTTAGCATTTTAGCAACCTCTTATCTGAAGTAATCCATGGGTAAGAGAATTGGGTGTATGATCATGTTGTACTATTACTATTATTTAGTCAAAGTAGGGGTTGGTACTGGAGTATTAGCTGGGTCATGTGTACTATCAGTATGATCATCGCAAGATGTGGGCTTGAGTATGATGGATAATTAAGAAGGCACTCTATCATTCAGAAGATGTGGTAGTAGTTGTCACATGACATCAAAGAAGTACTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_211#0 TCGCACAGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCT 60 consensus_211#1 ------------------------------------------------------------ consensus_211#0 GTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCC 120 consensus_211#1 ------------------------------------------------------------ consensus_211#0 GGCAGCTACGCGGTCAGCGACTCCGGCGACACCGACTTCGACGACGACGACGACGACGAC 180 consensus_211#1 ------------------------------------------------------------ consensus_211#0 CCCTTCGCTGACGCCATCTCGGGGGCCGGTGGCGAGCGGCGGCGCACTCCCTCTTCTTCC 240 consensus_211#1 ------------------------------------------------------------ consensus_211#0 GAGGAGGCGGAGGCGGAGGCGGAGGCTGATGATGAGGGGGAGGATGGTGGTGAGGGTGGG 300 consensus_211#1 ------------------------------------------------------------ consensus_211#0 GAGGAGGAGGATGAGGAGAATCTGAAGATCTGGGAGGAGAAGAGGAAGGTGAAGGCGGCG 360 consensus_211#1 ------------------------------------------------------------ consensus_211#0 GCGGCGGTGGCGGCGAGTGGGGCTGAGCGGGCGAGGGAGGCGGAGACGCTCATGGCGGAG 420 consensus_211#1 ------------------------------------------------------------ consensus_211#0 GTGTTCGACGCGGTCTCCGGCGTGCGCCGCGCGTACTCTGACCTCCAGGGGGCACACTGC 480 consensus_211#1 ------------------------------------------------------------ consensus_211#0 CCCTGGGACCCCGACAAGATGCGGAGCGCCGACGCCGCCGTCGTC-GCCAAGCT-CCGCC 538 consensus_211#1 -----------------------AGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAG 37 *** * ** ** * ** *** * * * consensus_211#0 ACCTCGCGCGGCTCCGCGACCGCTTCCGCCGCTCCGTCGCCACGGGGGGGCACATCCCCG 598 consensus_211#1 AAATGGCG-AACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGC 96 * * *** * ** * * * ** ** * * ** * * *** *** consensus_211#0 GCCCCATCCCCACCGCGCCGCCGCTCCGCGA--GGCCGTCGCGCCGTACGAGGCCGCGCT 656 consensus_211#1 CTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGCCGTACGAGGCCGCGCT 156 * * ** * * * ** *** **** ** ******************* consensus_211#0 CGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAA 716 consensus_211#1 CGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAA 216 ************************************************************ consensus_211#0 GCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTC 776 consensus_211#1 GCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTC 276 ************************************************************ consensus_211#0 CGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCG 836 consensus_211#1 CGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCG 336 ************************************************************ consensus_211#0 CGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGA 896 consensus_211#1 CGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGA 396 ************************************************************ consensus_211#0 CCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAA 956 consensus_211#1 CCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAA 456 ************************************************************ consensus_211#0 GCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTT 1016 consensus_211#1 GCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTT 516 ************************************************************ consensus_211#0 CTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTA 1076 consensus_211#1 CTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTA 576 ************************************************************ consensus_211#0 CACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGAC 1136 consensus_211#1 CACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGAC 636 ************************************************************ consensus_211#0 CTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGA 1196 consensus_211#1 CTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGA 696 ************************************************************ consensus_211#0 GCAGGCCGTCCTCGGCGACGGCGAGCACCGAAGGGCGGTGGAGGGCGGCGCGCACCCGCG 1256 consensus_211#1 GCAGGCCGTCCTCGGCGACGGCGAGCACCGGAGGGCGGTGGAGGGCGGCGCGCACCCGCG 756 ****************************** ***************************** consensus_211#0 GACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCT 1316 consensus_211#1 GACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCT 816 ************************************************************ consensus_211#0 GGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCA 1376 consensus_211#1 GGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCA 876 ************************************************************ consensus_211#0 CCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGT 1436 consensus_211#1 CCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGT 936 ************************************************************ consensus_211#0 CGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGT 1496 consensus_211#1 CGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGT 996 ************************************************************ consensus_211#0 CTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTT 1556 consensus_211#1 CTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTT 1056 ************************************************************ consensus_211#0 CCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACA 1616 consensus_211#1 CCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACA 1116 ************************************************************ consensus_211#0 TGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAAC------------------- 1657 consensus_211#1 TGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAACCATTTAGTCTACTTACTGT 1176 ***************************************** consensus_211#0 ------------------------------------------------------------ consensus_211#1 TCTATTTAGCATTTTAGCAACCTCTTATCTGAAGTAATCCATGGGTAAGAGAATTGGGTG 1236 consensus_211#0 ------------------------------------------------------------ consensus_211#1 TATGATCATGTTGTACTATTACTATTATTTAGTCAAAGTAGGGGTTGGTACTGGAGTATT 1296 consensus_211#0 ------------------------------------------------------------ consensus_211#1 AGCTGGGTCATGTGTACTATCAGTATGATCATCGCAAGATGTGGGCTTGAGTATGATGGA 1356 consensus_211#0 ------------------------------------------------------------ consensus_211#1 TAATTAAGAAGGCACTCTATCATTCAGAAGATGTGGTAGTAGTTGTCACATGACATCAAA 1416 consensus_211#0 ----------- consensus_211#1 GAAGTACTATC 1427 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||