cluster # 2116

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Oryza sativa
cluster # 2116 cluster # 2116 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2116#0 length = 542 sequences # 1

consensus_2116#1 length = 313 sequences # 1

consensusID : consensus_2116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence

                              [ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTATCCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAACCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGACTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTCAAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTGTTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAAGTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAAAA]

[+] EMBL BQ907714             [ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTATCCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAACCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGACTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTCAAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTGTTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAAGTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAAAA]




>consensus_2116#0
ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTAT
CCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAA
CCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGA
CTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTC
AAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTG
TTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAA
GTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAAT
GCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAAC
TATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAA
AA

consensusID : consensus_2116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCTTGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACAAGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATAATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAATGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACAAAAAAAAAA]

[+] EMBL BQ907494             [GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCTTGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACAAGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATAATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAATGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACAAAAAAAAAA]




>consensus_2116#1
GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCT
TGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACA
AGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATA
ATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAA
TGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCA
CACAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2116#0      ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTAT 60
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAA 120
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGA 180
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTC 240
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      AAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTA-AAGTCGCCCC-T 298
consensus_2116#1      GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCT 60
                        *      **** *  *  **  ** * *********** *****  ********** *

consensus_2116#0      TGTTATCCGTATATATCTCTTTAACTCTA-ATCTAATCT-ATCAA-TCTAATCTAAC-CA 354
consensus_2116#1      TGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACA 120
                      ***************************** ********* ***** *********** **

consensus_2116#0      AG-AGAAGTTACCATC-ATCCGTTAAAA--AGGAAAAAAATGC----GCAGAAAAAAATA 406
consensus_2116#1      AGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATA 180
                      ** ************* ********* *  *************     ************

consensus_2116#0      ATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAA 466
consensus_2116#1      ATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAAC-AAAAAAA 239
                      ****** ********************************************* *******

consensus_2116#0      ATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAAC 526
consensus_2116#1      ATGCTATTAAAA-CTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAAC 298
                      ************ ***********************************************

consensus_2116#0      CACACCAAAAAAAAAA 542
consensus_2116#1      CACACAAAAAAAAAA- 313
                      ***** *********