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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2116 cluster # 2116       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2116#0 length = 542 sequences # 1  
consensus_2116#1 length = 313 sequences # 1  

consensusID : consensus_2116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence
                              [ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTATCCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAACCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGACTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTCAAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTGTTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAAGTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAAAA]

[+] EMBL BQ907714             [ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTATCCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAACCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGACTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTCAAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTGTTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAAGTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAAAA]


>consensus_2116#0 ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTAT CCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAA CCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGA CTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTC AAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTG TTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAA GTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAAT GCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAAC TATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAA AA



consensusID : consensus_2116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence
                              [GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCTTGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACAAGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATAATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAATGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACAAAAAAAAAA]

[+] EMBL BQ907494             [GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCTTGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACAAGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATAATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAATGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACAAAAAAAAAA]


>consensus_2116#1 GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCT TGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACA AGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATA ATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAA TGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCA CACAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2116#0      ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTAT 60
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAA 120
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGA 180
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTC 240
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      AAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTA-AAGTCGCCCC-T 298
consensus_2116#1      GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCT 60
                        *      **** *  *  **  ** * *********** *****  ********** *

consensus_2116#0      TGTTATCCGTATATATCTCTTTAACTCTA-ATCTAATCT-ATCAA-TCTAATCTAAC-CA 354
consensus_2116#1      TGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACA 120
                      ***************************** ********* ***** *********** **

consensus_2116#0      AG-AGAAGTTACCATC-ATCCGTTAAAA--AGGAAAAAAATGC----GCAGAAAAAAATA 406
consensus_2116#1      AGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATA 180
                      ** ************* ********* *  *************     ************

consensus_2116#0      ATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAA 466
consensus_2116#1      ATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAAC-AAAAAAA 239
                      ****** ********************************************* *******

consensus_2116#0      ATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAAC 526
consensus_2116#1      ATGCTATTAAAA-CTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAAC 298
                      ************ ***********************************************

consensus_2116#0      CACACCAAAAAAAAAA 542
consensus_2116#1      CACACAAAAAAAAAA- 313
                      ***** ********* 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)