These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTATCCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAACCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGACTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTCAAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTGTTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAAGTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAAAA] [+] EMBL BQ907714 [ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTATCCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAACCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGACTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTCAAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTAAAGTCGCCCCTTGTTATCCGTATATATCTCTTTAACTCTAATCTAATCTATCAATCTAATCTAACCAAGAGAAGTTACCATCATCCGTTAAAAAGGAAAAAAATGCGCAGAAAAAAATAATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAAATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACCAAAAAAAAAA] consensusID : consensus_2116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCTTGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACAAGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATAATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAATGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACAAAAAAAAAA] [+] EMBL BQ907494 [GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCTTGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACAAGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATAATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACAAAAAAAATGCTATTAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAACCACACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2116#0 ACAAAGAGTTTCCATCTTCCTACACAAAGGAAAGAATAGTGCGAAAAAAAAAGTTTCTAT 60 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 CCGAAGGGAAACACGCGTGAATAAATACCTAATTAAAAATAAATATCTATCTCTAAAAAA 120 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 CCTTCTGTCGTAAAAAAAGGAAAAAAAGGACCGACTCCCGTAGAGAAAAAAAAAGTCCGA 180 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 CTCGTGAAAAAGAGGTTTTCTCGTCCGTAATAAAAAAAAAGAAAAAAAAACATCTAACTC 240 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 AAACTCCGTAAAAAGAAAAGGAGGAAAAAACGACCCGACCAAACTTA-AAGTCGCCCC-T 298 consensus_2116#1 GTATAAAAGAAAACGGCAGCGAACAATATACGACCCGACCCAACTTGTAAGTCGCCCCCT 60 * **** * * ** ** * *********** ***** ********** * consensus_2116#0 TGTTATCCGTATATATCTCTTTAACTCTA-ATCTAATCT-ATCAA-TCTAATCTAAC-CA 354 consensus_2116#1 TGTTATCCGTATATATCTCTTTAACTCTATATCTAATCTGATCAAATCTAATCTAACACA 120 ***************************** ********* ***** *********** ** consensus_2116#0 AG-AGAAGTTACCATC-ATCCGTTAAAA--AGGAAAAAAATGC----GCAGAAAAAAATA 406 consensus_2116#1 AGTAGAAGTTACCATCCATCCGTTAATACAAGGAAAAAAATGCCGCCACAGAAAAAAATA 180 ** ************* ********* * ************* ************ consensus_2116#0 ATTTCCNAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAACCAAAAAAA 466 consensus_2116#1 ATTTCCAAAAAAATGCGCGGGAAAAATACGGTTTCCTTCGTCTGAAAAAAAC-AAAAAAA 239 ****** ********************************************* ******* consensus_2116#0 ATGCTATTAAAAACTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAAC 526 consensus_2116#1 ATGCTATTAAAA-CTATCAGAAAGAAATACACCATTTCTAAAAAAATGGTTTCAAAAAAC 298 ************ *********************************************** consensus_2116#0 CACACCAAAAAAAAAA 542 consensus_2116#1 CACACAAAAAAAAAA- 313 ***** ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||