These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1157 fasta sequence [TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTACGTCATCTCCCCCACAGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGTCCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGTGCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGACACCTGCACTTACTTGGAGGGACTACAAGAGGTCTACAAATGAAAGAATAATGTCACCAGCTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGGAAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAGAGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTGATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATTTTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTAGGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAATGCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATGAGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATCTATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA] [+] EMBL AF442490 [TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTACGTCATCTCCCCCACAGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGTCCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGTGCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGACACCTGCACTTACTTGGAGGGACTACAAGAGGTCTACAAATGAAAGAATAATGTCACCAGCTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGGAAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAGAGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTGATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATTTTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTAGGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAATGCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATGAGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATCTATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA] consensusID : consensus_2123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTATGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGTCCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGTGCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGACACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAATGAAAGAATAATGGTCACAGCTGACCGAGTTCTTAAAAATTTGGGTATGGTT] [+] EMBL BF475207 [AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTATGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGTCCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGTGCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGACACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAATGAAAGAATAATGGTCACAGCTGACCGAGTTCTTAAAAATTTGGGTATGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2123#0 ------TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTA 54 consensus_2123#1 AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTA 60 ****************************************************** consensus_2123#0 CGTCATCTCC---------------CCCACAGGCGGAATTTGTTCGCCGGGCACACGCGA 99 consensus_2123#1 TGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGA 120 ****** ** ***** ***************************** consensus_2123#0 GGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGT 159 consensus_2123#1 GGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGT 180 ***************************************** ***** ************ consensus_2123#0 CCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGT 219 consensus_2123#1 CCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGT 240 ** ***************************** ********************* ***** consensus_2123#0 GCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGAC 279 consensus_2123#1 GCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGAC 300 ***************** ** ******************************** ****** consensus_2123#0 ACCTGCACTTACTTGGAGGGACTACAAGA-GGTCTACAAATGAAAGAATAATGTCACCAG 338 consensus_2123#1 ACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAA-TGAAAGAATAATGGTCACAG 359 ***************************** ********* ************* *** consensus_2123#0 CTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGG 398 consensus_2123#1 CTGACCGAGTTCTTAAA-AATTTGGGTATGGTT--------------------------- 391 ***************** ***** ***** *** consensus_2123#0 AAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAG 458 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 AGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTG 518 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 ATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATT 578 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 TTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTA 638 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 GGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAAT 698 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 GCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGC 758 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 AACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAAC 818 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 AGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATG 878 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 AGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAG 938 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 AAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATC 998 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 TTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTA 1058 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 TTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATC 1118 consensus_2123#1 ------------------------------------------------------------ consensus_2123#0 TATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA 1157 consensus_2123#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||