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Oryza sativa
cluster # 2123 cluster # 2123       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2123#0 length = 1157 sequences # 1  
consensus_2123#1 length = 391 sequences # 1  

consensusID : consensus_2123#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1157
fasta sequence
                              [TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTACGTCATCTCCCCCACAGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGTCCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGTGCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGACACCTGCACTTACTTGGAGGGACTACAAGAGGTCTACAAATGAAAGAATAATGTCACCAGCTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGGAAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAGAGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTGATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATTTTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTAGGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAATGCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATGAGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATCTATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA]

[+] EMBL AF442490             [TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTACGTCATCTCCCCCACAGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGTCCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGTGCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGACACCTGCACTTACTTGGAGGGACTACAAGAGGTCTACAAATGAAAGAATAATGTCACCAGCTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGGAAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAGAGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTGATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATTTTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTAGGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAATGCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATGAGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATCTATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA]


>consensus_2123#0 TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTACGTCAT CTCCCCCACAGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGG CAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGTCCTAGCTGGCGACGCTTTTGA AGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGTGCAAGGTGCACTGTTGCGTAT GTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGACACCTGCACTTACTTGGAGGGA CTACAAGAGGTCTACAAATGAAAGAATAATGTCACCAGCTGACCGAGTTCTTAAAGAATT TTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGGAAGCTGATAAAGTCTTGGAGCA AAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAGAGAAGAAAAGAGCTACTAATAA GTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTGATGAGGATGATAACCATTGGCC TACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATTTTTCAGTTACTGAAGAGGGTTG GCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTAGGAAGAAATCTTTAAATGGGAA GAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAATGCGGCGGGTCGCGAGGCTTGGT TGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTG GCAGCACACACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGA AGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATGAGATTGATGATGATGAGGGCAA TGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAATAGAAGACGGAC CACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTT GTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGA TGGATGATAAATATTTTAGAACAATTTGGTTATATATCTATGGTTGAACTTCCCGTGGAA AAAAAAAAAAAAAAAAA



consensusID : consensus_2123#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence
                              [AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTATGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGTCCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGTGCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGACACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAATGAAAGAATAATGGTCACAGCTGACCGAGTTCTTAAAAATTTGGGTATGGTT]

[+] EMBL BF475207             [AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTATGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGTCCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGTGCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGACACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAATGAAAGAATAATGGTCACAGCTGACCGAGTTCTTAAAAATTTGGGTATGGTT]


>consensus_2123#1 AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTA TGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGA GGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGT CCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGT GCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGAC ACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAATGAAAGAATAATGGTCACAGC TGACCGAGTTCTTAAAAATTTGGGTATGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2123#0      ------TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTA 54
consensus_2123#1      AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTA 60
                            ******************************************************

consensus_2123#0      CGTCATCTCC---------------CCCACAGGCGGAATTTGTTCGCCGGGCACACGCGA 99
consensus_2123#1      TGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGA 120
                       ****** **               ***** *****************************

consensus_2123#0      GGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGT 159
consensus_2123#1      GGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGT 180
                      ***************************************** ***** ************

consensus_2123#0      CCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGT 219
consensus_2123#1      CCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGT 240
                      ** ***************************** ********************* *****

consensus_2123#0      GCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGAC 279
consensus_2123#1      GCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGAC 300
                      ***************** ** ******************************** ******

consensus_2123#0      ACCTGCACTTACTTGGAGGGACTACAAGA-GGTCTACAAATGAAAGAATAATGTCACCAG 338
consensus_2123#1      ACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAA-TGAAAGAATAATGGTCACAG 359
                      ***************************** ********* *************    ***

consensus_2123#0      CTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGG 398
consensus_2123#1      CTGACCGAGTTCTTAAA-AATTTGGGTATGGTT--------------------------- 391
                      ***************** ***** ***** ***                           

consensus_2123#0      AAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAG 458
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      AGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTG 518
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      ATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATT 578
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      TTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTA 638
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      GGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAAT 698
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      GCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGC 758
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      AACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAAC 818
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      AGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATG 878
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      AGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAG 938
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      AAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATC 998
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      TTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTA 1058
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      TTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATC 1118
consensus_2123#1      ------------------------------------------------------------
                                                                                  

consensus_2123#0      TATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA 1157
consensus_2123#1      ---------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)