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Oryza sativa
cluster # 2131 cluster # 2131       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2131#0 length = 1551 sequences # 1  
consensus_2131#1 length = 558 sequences # 1  

consensusID : consensus_2131#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1551
fasta sequence
                              [CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTCTTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAATCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGGGTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCGAAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTTTAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCGCCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGTCCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGACCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCGTCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGGCCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGGGCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGATCCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCCTCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCCCGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCTACGTGTCCACGGGCGGCGGCGACGGCCTGGACTGCGCGCTCGCCGCCGCGGTGTACGGAGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATTGGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT]

[+] EMBL AK072296             [CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTCTTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAATCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGGGTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCGAAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTTTAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCGCCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGTCCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGACCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCGTCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGGCCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGGGCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGATCCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCCTCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCCCGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCTACGTGTCCACGGGCGGCGGCGACGGCCTGGACTGCGCGCTCGCCGCCGCGGTGTACGGAGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATTGGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT]


>consensus_2131#0 CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTC TTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAA TCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGG GTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCG AAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTT TAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCG CCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGT CCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGA CCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCG TCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGG CCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGG GCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGAT CCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCC TCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCC CGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCT ACGTGTCCACGGGCGGCGGCGACGGCCTGGACTGCGCGCTCGCCGCCGCGGTGTACGGAG GGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCC TGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGG CTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCG ACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGT TCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAAT TTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCAC ACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACC GAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGG CAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATTGGA TCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT



consensusID : consensus_2131#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence
                              [TCCACGGCCGCGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGGAGGGGAGGCGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTATTGTTCTTTTTGTTTTGTTAGATTTGGATGACAATGTTAGACATTGAGTCAGTAAACAAAGGAGGATGTAAAGCAAACGGCAAATCTCTTGTGTCTTGGATTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA]

[+] EMBL BQ907118             [TCCACGGCCGCGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGGAGGGGAGGCGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTATTGTTCTTTTTGTTTTGTTAGATTTGGATGACAATGTTAGACATTGAGTCAGTAAACAAAGGAGGATGTAAAGCAAACGGCAAATCTCTTGTGTCTTGGATTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA]


>consensus_2131#1 TCCACGGCCGCGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGGAGGGGAG GCGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACC ACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTC CCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATG GGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCG GCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTC AGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTATTGTTCTTT TTGTTTTGTTAGATTTGGATGACAATGTTAGACATTGAGTCAGTAAACAAAGGAGGATGT AAAGCAAACGGCAAATCTCTTGTGTCTTGGATTATGTTCTATACTGNTGGAAGAAGATTA AAGTATAAACAGAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2131#0      CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTC 60
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      TTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAA 120
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      TCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGG 180
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      GTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCG 240
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      AAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTT 300
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      TAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCG 360
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      CCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGT 420
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      CCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGA 480
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      CCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCG 540
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      TCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGG 600
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      CCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGG 660
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      GCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGAT 720
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      CCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCC 780
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      TCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCC 840
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      CGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCT 900
consensus_2131#1      ------------------------------------------------------------
                                                                                  

consensus_2131#0      ACGTGTCCACGGGCGGCGGCGACGGCCTGGA-CTGCGCGCT-CGCCGCCGCGGTGTACGG 958
consensus_2131#1      -----TCCACGGCCG--CGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGG 53
                           ******* **   ******** **** ******* * ******************

consensus_2131#0      AGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAAC 1018
consensus_2131#1      AGGGGAGG-CGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAAC 112
                      ******** **** ******* **************************************

consensus_2131#0      CCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGC 1078
consensus_2131#1      CCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGC 172
                      ************************************************************

consensus_2131#0      GGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGT 1138
consensus_2131#1      GGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGT 232
                      ************************************************************

consensus_2131#0      CGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAA 1198
consensus_2131#1      CGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAA 292
                      ************************************************************

consensus_2131#0      GTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAA 1258
consensus_2131#1      GTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAA 352
                      ************************************************************

consensus_2131#0      ATTTTGTCAGCTTGGAGATCAGATGATTAA-ACGGTCCAACATTGTGTTCTTGCAAATGT 1317
consensus_2131#1      ATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTAT 412
                      ****************************** *****  * ** **      *     * *

consensus_2131#0      CACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTC 1377
consensus_2131#1      TGTTCTTTTT---GTTTTGTTAGATTTGGATGA---CAAT-GTTAGACATTGAG----TC 461
                          * *  *   **    * * **   **      **** *** ** *  *      **

consensus_2131#0      ACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTA 1437
consensus_2131#1      AGTAAACAAAGGAGGATGTAAA-GCAAA---------CGGCAAATCTCTTGTGTCTTGGA 511
                      *   * *    *   * ***** ** **         *****  ****  *        *

consensus_2131#0      CGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATT 1497
consensus_2131#1      TTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA------------- 558
                               ****   *    * * *      * ****   *    *             

consensus_2131#0      GGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT 1551
consensus_2131#1      ------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)