These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [TCCTTTTTTGTTTTTGAAAAAACGGTGCATACAGCATTTCAGGCTTTTCAACAGTGTCATATTTACCCTAACATCCAGAAACGAATCTCACTATACACGATAGACAGCGTACCTATAATTATTTCTGAGGCCGAGAACGAAAACACCGCACATCCCTATACTGAACAAGCAAAACAAAAGGGAAAGAAACAATGGAGAATTAATTGGGTAGCGACCAACAGAAACTGCTACGCTTTGTGCCTCCCTCAGATTCAGAGGGAAAGATGCACCTCTCGAGCTCAACTGCCTCCTCACCTTTACAAATGACTAGTCACCAGCAAAAAAGATTAAAAAAAAAAAAAGAATGGGCAATGAATTAACTTGTCTCAAGTCAGTCAATCGTCAATATCCTGCACCCATTGCAGACCTTCTAATACTGATTCCACAGCTGAATTTGGAATCATAAGTCCAACAATCCGCTCATTATCATTTGTCTCCAAGCGAGCGACACGTATCCTCTTGTGAATTTGTCGAACCTGCTTAGCTAGGGCCTTTTCTACTATGCCCCAGACAGGAAGTATTAGACCACCCAAAATATTGATTTCCTGTAACCTTCTGCCTACTGTACAATAGCTTCCAAGTTTGCATTTGGGTCCATGCATACACTGCTTGGATGATGCATCATACTCTTCCTGCCAACCATTGCCAATTTTGTCAATTGATGAAACCTTCCTGTACTTGCTTTTAAGTTCAACCAAAGGCATTTCCCTTAAAGCTTC] [+] EMBL CB671992 [TCCTTTTTTGTTTTTGAAAAAACGGTGCATACAGCATTTCAGGCTTTTCAACAGTGTCATATTTACCCTAACATCCAGAAACGAATCTCACTATACACGATAGACAGCGTACCTATAATTATTTCTGAGGCCGAGAACGAAAACACCGCACATCCCTATACTGAACAAGCAAAACAAAAGGGAAAGAAACAATGGAGAATTAATTGGGTAGCGACCAACAGAAACTGCTACGCTTTGTGCCTCCCTCAGATTCAGAGGGAAAGATGCACCTCTCGAGCTCAACTGCCTCCTCACCTTTACAAATGACTAGTCACCAGCAAAAAAGATTAAAAAAAAAAAAAGAATGGGCAATGAATTAACTTGTCTCAAGTCAGTCAATCGTCAATATCCTGCACCCATTGCAGACCTTCTAATACTGATTCCACAGCTGAATTTGGAATCATAAGTCCAACAATCCGCTCATTATCATTTGTCTCCAAGCGAGCGACACGTATCCTCTTGTGAATTTGTCGAACCTGCTTAGCTAGGGCCTTTTCTACTATGCCCCAGACAGGAAGTATTAGACCACCCAAAATATTGATTTCCTGTAACCTTCTGCCTACTGTACAATAGCTTCCAAGTTTGCATTTGGGTCCATGCATACACTGCTTGGATGATGCATCATACTCTTCCTGCCAACCATTGCCAATTTTGTCAATTGATGAAACCTTCCTGTACTTGCTTTTAAGTTCAACCAAAGGCATTTCCCTTAAAGCTTC] consensusID : consensus_2135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [TTTTTTTTTTAGAAAAAACGGGTGCATACGCATTTCAGGCTTTCAACAGTGTCATATTTACCCTAANATCCAGAAACGAATCTCACTATACACGATAGACCAGCGTCACCCTCATAATATCATATTCTGAGGCCGCAGCAACGAACAACCACCCGCACATCGCCTATACTGCACACCAAGCGAACAACCAACAAGGTCAACAGCACAACCACATGGCAGCAATTCACATTGGGTCAGCGACCAACCAGCAACACTGCTCACGCTTTGAGCCTCCCTCAGCATTCCAGCAGGGGCCACAGATTGCCAACCTCTCTGAGCTCAACGTGNCTCCCTCACNCTTTACAA] [-] EMBL BI806985 [TTTTTTTTTTAGAAAAAACGGGTGCATACGCATTTCAGGCTTTCAACAGTGTCATATTTACCCTAANATCCAGAAACGAATCTCACTATACACGATAGACCAGCGTCACCCTCATAATATCATATTCTGAGGCCGCAGCAACGAACAACCACCCGCACATCGCCTATACTGCACACCAAGCGAACAACCAACAAGGTCAACAGCACAACCACATGGCAGCAATTCACATTGGGTCAGCGACCAACCAGCAACACTGCTCACGCTTTGAGCCTCCCTCAGCATTCCAGCAGGGGCCACAGATTGCCAACCTCTCTGAGCTCAACGTGNCTCCCTCACNCTTTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2135#0 TCCTTTTTTGTTTTTGAAAAAACGG-TGCATACAGCATTTCAGGCTTTTCAACAGTGTCA 59 consensus_2135#1 ----TTTTTTTTTTAGAAAAAACGGGTGCATAC-GCATTTCAGGCTTT-CAACAGTGTCA 54 ***** **** ********** ******* ************** *********** consensus_2135#0 TATTTACCCTAACATCCAGAAACGAATCTCACTATACACGATAGAC-AGCGTACCTATAA 118 consensus_2135#1 TATTTACCCTAANATCCAGAAACGAATCTCACTATACACGATAGACCAGCGTCACCCTCA 114 ************ ********************************* ***** * * * consensus_2135#0 TTAT------TTCTGAGGCCGAG--AACGAAAA--CACC-GCACATC-CCTATACTGAAC 166 consensus_2135#1 TAATATCATATTCTGAGGCCGCAGCAACGAACAACCACCCGCACATCGCCTATACTGCAC 174 * ** *********** ****** * **** ******* ********* ** consensus_2135#0 A---AGCAAAA---CAAAAGGGAAAGAAACA-------ATGGAG--AATTAA--TTGGGT 209 consensus_2135#1 ACCAAGCGAACAACCAACAAGGTCAACAGCACAACCACATGGCAGCAATTCACATTGGGT 234 * *** ** *** * ** * * ** **** **** * ****** consensus_2135#0 -AGCGACCAACAG---AAACTGCT-ACGCTTTGTGCCTCCCTCAGA--TTCAGAGGGA-- 260 consensus_2135#1 CAGCGACCAACCAGCAACACTGCTCACGCTTTGAGCCTCCCTCAGCATTCCAGCAGGGGC 294 ********** * ****** ******** *********** * *** ** consensus_2135#0 ---AAGATGC--ACCTCTC-GAGCTCAAC-TGCCTCC-TCACC-TTTACAAATGACTAGT 311 consensus_2135#1 CACAGATTGCCAACCTCTCTGAGCTCAACGTGNCTCCCTCACNCTTTACAA--------- 345 * *** ******* ********* ** **** **** ******* consensus_2135#0 CACCAGCAAAAAAGATTAAAAAAAAAAAAAGAATGGGCAATGAATTAACTTGTCTCAAGT 371 consensus_2135#1 ------------------------------------------------------------ consensus_2135#0 CAGTCAATCGTCAATATCCTGCACCCATTGCAGACCTTCTAATACTGATTCCACAGCTGA 431 consensus_2135#1 ------------------------------------------------------------ consensus_2135#0 ATTTGGAATCATAAGTCCAACAATCCGCTCATTATCATTTGTCTCCAAGCGAGCGACACG 491 consensus_2135#1 ------------------------------------------------------------ consensus_2135#0 TATCCTCTTGTGAATTTGTCGAACCTGCTTAGCTAGGGCCTTTTCTACTATGCCCCAGAC 551 consensus_2135#1 ------------------------------------------------------------ consensus_2135#0 AGGAAGTATTAGACCACCCAAAATATTGATTTCCTGTAACCTTCTGCCTACTGTACAATA 611 consensus_2135#1 ------------------------------------------------------------ consensus_2135#0 GCTTCCAAGTTTGCATTTGGGTCCATGCATACACTGCTTGGATGATGCATCATACTCTTC 671 consensus_2135#1 ------------------------------------------------------------ consensus_2135#0 CTGCCAACCATTGCCAATTTTGTCAATTGATGAAACCTTCCTGTACTTGCTTTTAAGTTC 731 consensus_2135#1 ------------------------------------------------------------ consensus_2135#0 AACCAAAGGCATTTCCCTTAAAGCTTC 758 consensus_2135#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||