These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2116 fasta sequence [GTTTCAAAACCCCCCAAAACCCAAGGGCTAATCGGGCAACCTCCTTCCCCACGCCGCCGCCGCCGCGATGCCCCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCGCCGCGAGGAGCTTCTCGCGGTGGCTGCGCGCGCTCGGCGCCGCCGAGGTGGTCGCCGTCGGGGAGGGTGACGTGGATGGTGGGGATCTCGAGGTCGTGTTCGAGGAGTGGTGTGGGAGGGTGGTGAGGGTGGTGAAAGGGGAGGAGATCGGAGAGGGGCACAACGGAGAGAGCGATGGCTTTGATGAGTTGGAAGAGGAGGAATCCGATGATGACGACGACGAAGAGGAGGTCGATGGCGGGGAGGTCGACATGGAGGACATTGCCGGGAAGGCACCGGCGGCAAGGAGGCGGAATGGGAAGGTGGAGGGGGCTTTGTCCAACGGAGGGGAGAATGGTGTGAGGGACATGGTCACTCCAATCATCAGGACGAGTTTAGAGAAGCAAGGTTACAAAATTATCGGTTCTCATAGTGGGGTGAAGATTTGTAGATGGACAAAGTCACAACTCCGAGGCCGCGGAGGGTGTTACAAGCACTCATTTTATGGCATAGAAAGTCACAGATGTATGGAGGCAACTCCAAGTCTGGCCTGTGCAAATAAGTGTGTGTTTTGTTGGAGGCATCACACAAATCCTGTTGGGAAGAGTTGGAAATGGAAGATGGATGATCCTCTCGACATTGTTAATGCTGCAATTGATCAACACACAAAGATGGTTAAGCAGATGAAAGGGGTACCAGGAGTAAAGCCAGAGAGGCTGGCAGAGGGTCTATCTCCTAGACATTGTGCATTATCTCTGGTCGGGGAACCGATTATGTATCCAGAGATAAATGTTCTGATCGATGAGCTACACCGCAGACACATATCTACATTTCTTGTCACTAATGCACAGTTTCCTGATAAGATTAAGACACTGAAACCAATCACTCAGCTGTATGTCAGTGTGGATGCAGCTACAAAGGAAAGCTTGAAAGCTGTCGACAGACCATTATTTCAGACTTCTGGGAGCGTTTTCTGGATTCACTGAAGTCACTGCATGACAAAGATCAACGAACTGTCTACCGGCTGACATTGGTTAAAGGCTGGAATGCAGAAGAGATAGATGGTTATGCAAAGTTACTAAGCCTTGGCCAACCCGATTTCATTGAAATCAAGGGTGTGACATATTGTGGCTCGTCAGCAACTTCCAAGTTAACGATGGAAAATGTCCCCTGGCACTCTGATGTAAAAGATTTCTCAGAGGCTTTGGCATTAAAAAGCGGTGGCGTGTATGAAGTAGCTTGTGAGCATGCTCATTCATGCTGTGTTCTACTTGCAAAGGTGGATAAGTTCAAGATCAACGGCAAATGGCATACCTGGATAGATTATGATCGATTCCATGAACTGGTGACATCCGGAAAGCCTTTTAGGAGCCAAGATTACATGGCTCTCACACCTTCCTGGGCTGTCTATGGTGCAGAGGAAGGTGGCTTTGATCCAGATCAATCTCGTTACAAGAAAGAAAGACGTCATGGTGCAGCAGCGCTCAAAGACTAACCTATCTCCAATCATTACCAATTTTGTTACCAAGCCCTCGGATTGCTTCCTTGAAGGACTAACCTATTTTCTAGATTTCAATAGTCAAAATTTTGCGGTGGCCTTTTCCATTTCATGGATCTGCCTGTGTGTATCAATCCGTTCCTGGATTAATTGTGTACGCCATAGGCCTATACTAAATATTTTACAACATGGAGCTCTGTTTTATTTCTCTGACCAGATGGTTTAAAAATGTTGTGATGTTTTT] [+] EMBL AK100507 [GTTTCAAAACCCCCCAAAACCCAAGGGCTAATCGGGCAACCTCCTTCCCCACGCCGCCGCCGCCGCGATGCCCCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCGCCGCGAGGAGCTTCTCGCGGTGGCTGCGCGCGCTCGGCGCCGCCGAGGTGGTCGCCGTCGGGGAGGGTGACGTGGATGGTGGGGATCTCGAGGTCGTGTTCGAGGAGTGGTGTGGGAGGGTGGTGAGGGTGGTGAAAGGGGAGGAGATCGGAGAGGGGCACAACGGAGAGAGCGATGGCTTTGATGAGTTGGAAGAGGAGGAATCCGATGATGACGACGACGAAGAGGAGGTCGATGGCGGGGAGGTCGACATGGAGGACATTGCCGGGAAGGCACCGGCGGCAAGGAGGCGGAATGGGAAGGTGGAGGGGGCTTTGTCCAACGGAGGGGAGAATGGTGTGAGGGACATGGTCACTCCAATCATCAGGACGAGTTTAGAGAAGCAAGGTTACAAAATTATCGGTTCTCATAGTGGGGTGAAGATTTGTAGATGGACAAAGTCACAACTCCGAGGCCGCGGAGGGTGTTACAAGCACTCATTTTATGGCATAGAAAGTCACAGATGTATGGAGGCAACTCCAAGTCTGGCCTGTGCAAATAAGTGTGTGTTTTGTTGGAGGCATCACACAAATCCTGTTGGGAAGAGTTGGAAATGGAAGATGGATGATCCTCTCGACATTGTTAATGCTGCAATTGATCAACACACAAAGATGGTTAAGCAGATGAAAGGGGTACCAGGAGTAAAGCCAGAGAGGCTGGCAGAGGGTCTATCTCCTAGACATTGTGCATTATCTCTGGTCGGGGAACCGATTATGTATCCAGAGATAAATGTTCTGATCGATGAGCTACACCGCAGACACATATCTACATTTCTTGTCACTAATGCACAGTTTCCTGATAAGATTAAGACACTGAAACCAATCACTCAGCTGTATGTCAGTGTGGATGCAGCTACAAAGGAAAGCTTGAAAGCTGTCGACAGACCATTATTTCAGACTTCTGGGAGCGTTTTCTGGATTCACTGAAGTCACTGCATGACAAAGATCAACGAACTGTCTACCGGCTGACATTGGTTAAAGGCTGGAATGCAGAAGAGATAGATGGTTATGCAAAGTTACTAAGCCTTGGCCAACCCGATTTCATTGAAATCAAGGGTGTGACATATTGTGGCTCGTCAGCAACTTCCAAGTTAACGATGGAAAATGTCCCCTGGCACTCTGATGTAAAAGATTTCTCAGAGGCTTTGGCATTAAAAAGCGGTGGCGTGTATGAAGTAGCTTGTGAGCATGCTCATTCATGCTGTGTTCTACTTGCAAAGGTGGATAAGTTCAAGATCAACGGCAAATGGCATACCTGGATAGATTATGATCGATTCCATGAACTGGTGACATCCGGAAAGCCTTTTAGGAGCCAAGATTACATGGCTCTCACACCTTCCTGGGCTGTCTATGGTGCAGAGGAAGGTGGCTTTGATCCAGATCAATCTCGTTACAAGAAAGAAAGACGTCATGGTGCAGCAGCGCTCAAAGACTAACCTATCTCCAATCATTACCAATTTTGTTACCAAGCCCTCGGATTGCTTCCTTGAAGGACTAACCTATTTTCTAGATTTCAATAGTCAAAATTTTGCGGTGGCCTTTTCCATTTCATGGATCTGCCTGTGTGTATCAATCCGTTCCTGGATTAATTGTGTACGCCATAGGCCTATACTAAATATTTTACAACATGGAGCTCTGTTTTATTTCTCTGACCAGATGGTTTAAAAATGTTGTGATGTTTTT] consensusID : consensus_214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [CCTCCTTCCCCCGCCGCCGCCGCCGCGATGCCTCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCACCCACGACGGCGGCGCGCCCCCTCCCGCCGCGGCCTTCCTCGCCCGCTGGCTCGAGG] [+] EMBL CB640772 [CCTCCTTCCCCCGCCGCCGCCGCCGCGATGCCTCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCACCCACGACGGCGGCGCGCCCCCTCCCGCCGCGGCCTTCCTCGCCCGCTGGCTCGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_214#0 GTTTCAAAACCCCCCAAAACCCAAGGGCTAATCGGGCAACCTCCTTCCCCACGCCGCCGC 60 consensus_214#1 ---------------------------------------CCTCCTTCCCC-CGCCGCCGC 20 *********** ********* consensus_214#0 CGCCGCGATGCCCCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCT 120 consensus_214#1 CGCCGCGATGCCTCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCT 80 ************ *********************************************** consensus_214#0 CGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCT 180 consensus_214#1 CGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCT 140 ************************************************************ consensus_214#0 CCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCT 240 consensus_214#1 CCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCT 200 ************************************************************ consensus_214#0 CCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCT 300 consensus_214#1 CCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCT 260 ************************************************************ consensus_214#0 CGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCT 360 consensus_214#1 CGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCT 320 ************************************************************ consensus_214#0 CCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCGCCGCGAGGAGCTTCTCGCGGTGGCT 420 consensus_214#1 CCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCACC-------------CACGACGGCG 367 ********************************** ** * ** *** consensus_214#0 GCGCGCGCTCGGCGCCGCCGAGGTGGTCGCCGTCGGGGAGGGTGACGTGGATGGTGGGGA 480 consensus_214#1 GCGCGCCCCC--TCCCGCCGCGGCCTTCCTCGCCCGCTGGCTCGAGG------------- 412 ****** * * ****** ** ** ** * * * ** * consensus_214#0 TCTCGAGGTCGTGTTCGAGGAGTGGTGTGGGAGGGTGGTGAGGGTGGTGAAAGGGGAGGA 540 consensus_214#1 ------------------------------------------------------------ consensus_214#0 GATCGGAGAGGGGCACAACGGAGAGAGCGATGGCTTTGATGAGTTGGAAGAGGAGGAATC 600 consensus_214#1 ------------------------------------------------------------ consensus_214#0 CGATGATGACGACGACGAAGAGGAGGTCGATGGCGGGGAGGTCGACATGGAGGACATTGC 660 consensus_214#1 ------------------------------------------------------------ consensus_214#0 CGGGAAGGCACCGGCGGCAAGGAGGCGGAATGGGAAGGTGGAGGGGGCTTTGTCCAACGG 720 consensus_214#1 ------------------------------------------------------------ consensus_214#0 AGGGGAGAATGGTGTGAGGGACATGGTCACTCCAATCATCAGGACGAGTTTAGAGAAGCA 780 consensus_214#1 ------------------------------------------------------------ consensus_214#0 AGGTTACAAAATTATCGGTTCTCATAGTGGGGTGAAGATTTGTAGATGGACAAAGTCACA 840 consensus_214#1 ------------------------------------------------------------ consensus_214#0 ACTCCGAGGCCGCGGAGGGTGTTACAAGCACTCATTTTATGGCATAGAAAGTCACAGATG 900 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TATGGAGGCAACTCCAAGTCTGGCCTGTGCAAATAAGTGTGTGTTTTGTTGGAGGCATCA 960 consensus_214#1 ------------------------------------------------------------ consensus_214#0 CACAAATCCTGTTGGGAAGAGTTGGAAATGGAAGATGGATGATCCTCTCGACATTGTTAA 1020 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TGCTGCAATTGATCAACACACAAAGATGGTTAAGCAGATGAAAGGGGTACCAGGAGTAAA 1080 consensus_214#1 ------------------------------------------------------------ consensus_214#0 GCCAGAGAGGCTGGCAGAGGGTCTATCTCCTAGACATTGTGCATTATCTCTGGTCGGGGA 1140 consensus_214#1 ------------------------------------------------------------ consensus_214#0 ACCGATTATGTATCCAGAGATAAATGTTCTGATCGATGAGCTACACCGCAGACACATATC 1200 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TACATTTCTTGTCACTAATGCACAGTTTCCTGATAAGATTAAGACACTGAAACCAATCAC 1260 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TCAGCTGTATGTCAGTGTGGATGCAGCTACAAAGGAAAGCTTGAAAGCTGTCGACAGACC 1320 consensus_214#1 ------------------------------------------------------------ consensus_214#0 ATTATTTCAGACTTCTGGGAGCGTTTTCTGGATTCACTGAAGTCACTGCATGACAAAGAT 1380 consensus_214#1 ------------------------------------------------------------ consensus_214#0 CAACGAACTGTCTACCGGCTGACATTGGTTAAAGGCTGGAATGCAGAAGAGATAGATGGT 1440 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TATGCAAAGTTACTAAGCCTTGGCCAACCCGATTTCATTGAAATCAAGGGTGTGACATAT 1500 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TGTGGCTCGTCAGCAACTTCCAAGTTAACGATGGAAAATGTCCCCTGGCACTCTGATGTA 1560 consensus_214#1 ------------------------------------------------------------ consensus_214#0 AAAGATTTCTCAGAGGCTTTGGCATTAAAAAGCGGTGGCGTGTATGAAGTAGCTTGTGAG 1620 consensus_214#1 ------------------------------------------------------------ consensus_214#0 CATGCTCATTCATGCTGTGTTCTACTTGCAAAGGTGGATAAGTTCAAGATCAACGGCAAA 1680 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TGGCATACCTGGATAGATTATGATCGATTCCATGAACTGGTGACATCCGGAAAGCCTTTT 1740 consensus_214#1 ------------------------------------------------------------ consensus_214#0 AGGAGCCAAGATTACATGGCTCTCACACCTTCCTGGGCTGTCTATGGTGCAGAGGAAGGT 1800 consensus_214#1 ------------------------------------------------------------ consensus_214#0 GGCTTTGATCCAGATCAATCTCGTTACAAGAAAGAAAGACGTCATGGTGCAGCAGCGCTC 1860 consensus_214#1 ------------------------------------------------------------ consensus_214#0 AAAGACTAACCTATCTCCAATCATTACCAATTTTGTTACCAAGCCCTCGGATTGCTTCCT 1920 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TGAAGGACTAACCTATTTTCTAGATTTCAATAGTCAAAATTTTGCGGTGGCCTTTTCCAT 1980 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TTCATGGATCTGCCTGTGTGTATCAATCCGTTCCTGGATTAATTGTGTACGCCATAGGCC 2040 consensus_214#1 ------------------------------------------------------------ consensus_214#0 TATACTAAATATTTTACAACATGGAGCTCTGTTTTATTTCTCTGACCAGATGGTTTAAAA 2100 consensus_214#1 ------------------------------------------------------------ consensus_214#0 ATGTTGTGATGTTTTT 2116 consensus_214#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||