These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [TTTTTTTTTTTTTTAAATACACACACATACATATAAAACAAAATATATGCATCCCTCAAAAAACATTACAAACATCAAACATATTACATACTTTAGGCGTAAATGCTTGGGAGAGGTGCATAAACATGCATCATATATTTTGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGTGGATTATATTCCACCGCCTTAAGAAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCTCCTTTTTTATGCCGCCATCAGCCAAGGTGCTTGTATTACCACTAGGCCGGGTTCCATAAACATGCCCCATCTTTAATCTCTTTGTTTCCATGTAACGCCGATTCTCATTGGTTATTGGTGTCAACAGTGGCACTCTGCCCAAGACACTCAAACCATAGCCCTTCAGTCCAGTATATTTCGCAGGATTGTTAGTCATAAGCCTCATGGTTCGGACACCAAGATCTCGTAGTATCTGGGCACCAATACCGTCCCCTTGTCTC] [+] EMBL CA763687 [TTTTTTTTTTTTTTAAATACACACACATACATATAAAACAAAATATATGCATCCCTCAAAAAACATTACAAACATCAAACATATTACATACTTTAGGCGTAAATGCTTGGGAGAGGTGCATAAACATGCATCATATATTTTGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGTGGATTATATTCCACCGCCTTAAGAAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCTCCTTTTTTATGCCGCCATCAGCCAAGGTGCTTGTATTACCACTAGGCCGGGTTCCATAAACATGCCCCATCTTTAATCTCTTTGTTTCCATGTAACGCCGATTCTCATTGGTTATTGGTGTCAACAGTGGCACTCTGCCCAAGACACTCAAACCATAGCCCTTCAGTCCAGTATATTTCGCAGGATTGTTAGTCATAAGCCTCATGGTTCGGACACCAAGATCTCGTAGTATCTGGGCACCAATACCGTCCCCTTGTCTC] consensusID : consensus_2152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TTTTTGCATAAACATGCATCATATATTTNGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGNGGATTATATTCCACCGCCTTAAGNAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCNCCTTTTTTNTGCCGCCATCAGCCAAGGNGCTTGTNTNACCACTAGGCCGGGNTCCATANACATGCCCCATCTTTAATCTCTTNGTTTCCATGTAACGCCGATTCNCATTGGNTATTGGNGTCAACAGTGGNACTCTGCGCCAAGACACTCAAACCATAGNCCTTCAGTCCAGTATATTNCGNAGGATTGTNAGNCANAAGCCTCATGGTTCGGACANCAAGGATCTCGTAGTAATCTGNGCACCAATACCGGTANTCTCGTGAAATCAAACCGGGNAGANCGAGATNCTCATTAGCCTCCAACAGTTATCCNGGGNCATCGGGCCTGCAAAATNNGNATGCACGGAANCTTGGTGAA] [-] EMBL AU032663 [TTTTTGCATAAACATGCATCATATATTTNGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGNGGATTATATTCCACCGCCTTAAGNAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCNCCTTTTTTNTGCCGCCATCAGCCAAGGNGCTTGTNTNACCACTAGGCCGGGNTCCATANACATGCCCCATCTTTAATCTCTTNGTTTCCATGTAACGCCGATTCNCATTGGNTATTGGNGTCAACAGTGGNACTCTGCGCCAAGACACTCAAACCATAGNCCTTCAGTCCAGTATATTNCGNAGGATTGTNAGNCANAAGCCTCATGGTTCGGACANCAAGGATCTCGTAGTAATCTGNGCACCAATACCGGTANTCTCGTGAAATCAAACCGGGNAGANCGAGATNCTCATTAGCCTCCAACAGTTATCCNGGGNCATCGGGCCTGCAAAATNNGNATGCACGGAANCTTGGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2152#0 TTTTTTTTTTTTTTAAATACACACACATACATATAAAACAAAATATATGCATCCCTCAAA 60 consensus_2152#1 ------------------------------------------------------------ consensus_2152#0 AAACATTACAAACATCAAACATATTACATACTTTAGGCGTAAATGCTTGGGAGAGGTGCA 120 consensus_2152#1 ----------------------------------------------------TTTTTGCA 8 **** consensus_2152#0 TAAACATGCATCATATATTTTGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAG 180 consensus_2152#1 TAAACATGCATCATATATTTNGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAG 68 ******************** *************************************** consensus_2152#0 GATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGC 240 consensus_2152#1 GATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGC 128 ************************************************************ consensus_2152#0 TTAAAATCAAATTCGTGGATTATATTCCACCGCCTTAAGAAAAATGAATATAGTTAATCT 300 consensus_2152#1 TTAAAATCAAATTCGNGGATTATATTCCACCGCCTTAAGNAAAATGAATATAGTTAATCT 188 *************** *********************** ******************** consensus_2152#0 CCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCTCCTTTTTTATGCCG 360 consensus_2152#1 CCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCNCCTTTTTTNTGCCG 248 ********************************************* ******** ***** consensus_2152#0 CCATCAGCCAAGGTGCTTGTATTACCACTAGGCCGGGTTCCATAAACATGCCCCATCTTT 420 consensus_2152#1 CCATCAGCCAAGGNGCTTGTNTNACCACTAGGCCGGGNTCCATANACATGCCCCATCTTT 308 ************* ****** * ************** ****** *************** consensus_2152#0 AATCTCTTTGTTTCCATGTAACGCCGATTCTCATTGGTTATTGGTGTCAACAGTGGCACT 480 consensus_2152#1 AATCTCTTNGTTTCCATGTAACGCCGATTCNCATTGGNTATTGGNGTCAACAGTGGNACT 368 ******** ********************* ****** ****** *********** *** consensus_2152#0 CTGC-CCAAGACACTCAAACCATAGCCCTTCAGTCCAGTATATTTCGCAGGATTGTTAGT 539 consensus_2152#1 CTGCGCCAAGACACTCAAACCATAGNCCTTCAGTCCAGTATATTNCGNAGGATTGTNAGN 428 **** ******************** ****************** ** ******** ** consensus_2152#0 CATAAGCCTCATGGTTCGGACACCAAG-ATCTCGTAGTA-TCTGGGCACCAATACCG-TC 596 consensus_2152#1 CANAAGCCTCATGGTTCGGACANCAAGGATCTCGTAGTAATCTGNGCACCAATACCGGTA 488 ** ******************* **** *********** **** ************ * consensus_2152#0 CCCTTGTCTC-------------------------------------------------- 606 consensus_2152#1 NTCTCGTGAAATCAAACCGGGNAGANCGAGATNCTCATTAGCCTCCAACAGTTATCCNGG 548 ** ** consensus_2152#0 ------------------------------------------- consensus_2152#1 GNCATCGGGCCTGCAAAATNNGNATGCACGGAANCTTGGTGAA 591 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||