These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 871 fasta sequence [TACCCGGGCCCCCCCCTTTCGAGGTCGACGGTACTCGACTAAGCTTGATCTTNGGTGAGCCGACGAGACAAGGAGGCACGATCTGCTATACATGCGTGTACCTGCATGCATCCTGACGATGCGTGCGATGGGCCAAACCATAAAGATCTGTCTTCACAGATACAATGCACTTAATGCAGGCATTCATGCTATCGATGGACACATGCCTGAATCAGCGATTGCTGGCTGGTGGGTGAAGGCTTCGCACAAGCTGTGTGTTAAGCGAGTGCGACGAACGAAATCTTTGGCAGAGCTTTCACAGACTCTTGCTGATTGTGTGGGGGCAATGGATGAGGATTGACTGTACAAACGATCATCATCTGTAAGCTTTTGTTCGTATTTGGATGACATTGACATATACTTACAAACAATGCCACACACAACATCAACAGTTGCACTGAGTGTTGTTAAATTGAATGCCCTCATTACGCCTTATTTATAAAGAGCTAATTCTGACAGACCATTGATCGAACAGACAGTGCAGACAAAAACGCGAGCATGCGTGGGGATAGCTAGGAATCGATGATGGAAGTCTTTCTTTTGTGGGACTCCAAGCAAAGCACCCAGCTGACACGCTCTCTCATTAACTGAAAGCTATTTTGTTTGATTGACTAGCTATCTTCTCAATACTGACACAAACATACAGACTGTTTCTTGATCATCAAGCCTTACCAAAAACCATGCCTGGCTAGCTATGTTGGATACCTGCATAACATACTTGCTTCCACCCAACAGACAGACAGTCCTTACGTACGATACGTGACAGGCAGGAAAAGACGTTCTTTTGTTAGTATCATTGACTGCGTCATGCGAATGATTTTGCTCACACACT] [+] EMBL CA767302 [TACCCGGGCCCCCCCCTTTCGAGGTCGACGGTACTCGACTAAGCTTGATCTTNGGTGAGCCGACGAGACAAGGAGGCACGATCTGCTATACATGCGTGTACCTGCATGCATCCTGACGATGCGTGCGATGGGCCAAACCATAAAGATCTGTCTTCACAGATACAATGCACTTAATGCAGGCATTCATGCTATCGATGGACACATGCCTGAATCAGCGATTGCTGGCTGGTGGGTGAAGGCTTCGCACAAGCTGTGTGTTAAGCGAGTGCGACGAACGAAATCTTTGGCAGAGCTTTCACAGACTCTTGCTGATTGTGTGGGGGCAATGGATGAGGATTGACTGTACAAACGATCATCATCTGTAAGCTTTTGTTCGTATTTGGATGACATTGACATATACTTACAAACAATGCCACACACAACATCAACAGTTGCACTGAGTGTTGTTAAATTGAATGCCCTCATTACGCCTTATTTATAAAGAGCTAATTCTGACAGACCATTGATCGAACAGACAGTGCAGACAAAAACGCGAGCATGCGTGGGGATAGCTAGGAATCGATGATGGAAGTCTTTCTTTTGTGGGACTCCAAGCAAAGCACCCAGCTGACACGCTCTCTCATTAACTGAAAGCTATTTTGTTTGATTGACTAGCTATCTTCTCAATACTGACACAAACATACAGACTGTTTCTTGATCATCAAGCCTTACCAAAAACCATGCCTGGCTAGCTATGTTGGATACCTGCATAACATACTTGCTTCCACCCAACAGACAGACAGTCCTTACGTACGATACGTGACAGGCAGGAAAAGACGTTCTTTTGTTAGTATCATTGACTGCGTCATGCGAATGATTTTGCTCACACACT] consensusID : consensus_2154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [TCTGTGCAGACAAGAACGCGAGCATCGGTGGGATAGCTAGGAATCGATGATGGAATTCTTTCTTTTGTGGTACTCCAAGCAAGCACCCAGCTGACACGTTCTCTCATCAACTGCAAGTTTTTTTGTTTGATTGTCGAGCTTTTTTCTCAAGACTGAGACAACCATAATGTCTCTTCCTTGAGCATCAGGCCTTAGCAGAAGCCATGGCTTCCTAGTTCTGCTGGATACCTGGAGAACATCCTTGTTCCCACCCAACAGAAAGTCGTCCCTTATGTACAATAGTAGACAGGAAAAAAAGGGCTTTTTTTTGGTTAATAATCATTGCTTCCGCCATGTGAATTTTTTTGCTCACAACATTGAGTGATCACGAGGAATACTAAAAACTTCTATATAGGTCATTGCCGGATAGATGATGTATGTTGTTCATGAACTAAGGCGACCCCTTTTGATGCAATAAGAGGGTCAGATATCTCCTTTTTGATCGGTTAAAAAAAA] [+] EMBL BQ906779 [TCTGTGCAGACAAGAACGCGAGCATCGGTGGGATAGCTAGGAATCGATGATGGAATTCTTTCTTTTGTGGTACTCCAAGCAAGCACCCAGCTGACACGTTCTCTCATCAACTGCAAGTTTTTTTGTTTGATTGTCGAGCTTTTTTCTCAAGACTGAGACAACCATAATGTCTCTTCCTTGAGCATCAGGCCTTAGCAGAAGCCATGGCTTCCTAGTTCTGCTGGATACCTGGAGAACATCCTTGTTCCCACCCAACAGAAAGTCGTCCCTTATGTACAATAGTAGACAGGAAAAAAAGGGCTTTTTTTTGGTTAATAATCATTGCTTCCGCCATGTGAATTTTTTTGCTCACAACATTGAGTGATCACGAGGAATACTAAAAACTTCTATATAGGTCATTGCCGGATAGATGATGTATGTTGTTCATGAACTAAGGCGACCCCTTTTGATGCAATAAGAGGGTCAGATATCTCCTTTTTGATCGGTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2154#0 TACCCGGGCCCCCCCCTTTCGAGGTCGACGGTACTCGACTAAGCTTGATCTTNGGTGAGC 60 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 CGACGAGACAAGGAGGCACGATCTGCTATACATGCGTGTACCTGCATGCATCCTGACGAT 120 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 GCGTGCGATGGGCCAAACCATAAAGATCTGTCTTCACAGATACAATGCACTTAATGCAGG 180 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 CATTCATGCTATCGATGGACACATGCCTGAATCAGCGATTGCTGGCTGGTGGGTGAAGGC 240 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 TTCGCACAAGCTGTGTGTTAAGCGAGTGCGACGAACGAAATCTTTGGCAGAGCTTTCACA 300 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 GACTCTTGCTGATTGTGTGGGGGCAATGGATGAGGATTGACTGTACAAACGATCATCATC 360 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 TGTAAGCTTTTGTTCGTATTTGGATGACATTGACATATACTTACAAACAATGCCACACAC 420 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 AACATCAACAGTTGCACTGAGTGTTGTTAAATTGAATGCCCTCATTACGCCTTATTTATA 480 consensus_2154#1 ------------------------------------------------------------ consensus_2154#0 AAGAGCTAATTCTGACAGACCATTGATCGAACAGACAGTGCAGACAAAAACGCGAGCATG 540 consensus_2154#1 ----------------------------------TCTGTGCAGACAAGAACGCGAGCATC 26 * ********** *********** consensus_2154#0 CGTGGGGATAGCTAGGAATCGATGATGGAAGTCTTTCTTTTGTGGGACTCCAAGCAAAGC 600 consensus_2154#1 GGTGGG-ATAGCTAGGAATCGATGATGGAATTCTTTCTTTTGTGGTACTCCAAGCAA-GC 84 ***** *********************** ************** *********** ** consensus_2154#0 ACCCAGCTGACACGCTCTCTCATTAACTGAAAGCTATTTTGTTTGATTGACTAGCTATCT 660 consensus_2154#1 ACCCAGCTGACACGTTCTCTCATCAACTGCAAGTTTTTTTGTTTGATTGTCGAGCTTTTT 144 ************** ******** ***** *** * ************* * **** * * consensus_2154#0 TCTCAATACTGACACAAACATACAGACTGTTTCTTGATCATCAAGCCTTACCAAAAACCA 720 consensus_2154#1 TCTCAAGACTGAGACAACCATAATGTCTCTTCCTTGAGCATCAGGCCTTAGCAGAAGCCA 204 ****** ***** **** **** * ** ** ***** ***** ****** ** ** *** consensus_2154#0 TGCCTGGCTAGCTATGTTGGATACCTGCATAACATACTTGCTTCCACCCAACAGACAGAC 780 consensus_2154#1 TGGCTTCCTAGTTCTGCTGGATACCTGGAGAACATCCTTGTTCCCACCCAACAGAAAGTC 264 ** ** **** * ** ********** * ***** **** * ************ ** * consensus_2154#0 AGTCCTTACGTACGATACGTGACAGGCAGGAAAAGACGTTCTTTTG-TTAGTA-TCATTG 838 consensus_2154#1 GTCCCTTATGTACAATAGTAGACAGGAAAAAAAGGGCTTTTTTTTGGTTAATAATCATTG 324 ***** **** *** ****** * *** * * ** ***** *** ** ****** consensus_2154#0 ACTGCGTCATGCGAATGATTTTGCTCACA-CACT-------------------------- 871 consensus_2154#1 CTTCCGCCATGTGAATTTTTTTGCTCACAACATTGAGTGATCACGAGGAATACTAAAAAC 384 * ** **** **** *********** ** * consensus_2154#0 ------------------------------------------------------------ consensus_2154#1 TTCTATATAGGTCATTGCCGGATAGATGATGTATGTTGTTCATGAACTAAGGCGACCCCT 444 consensus_2154#0 --------------------------------------------------- consensus_2154#1 TTTGATGCAATAAGAGGGTCAGATATCTCCTTTTTGATCGGTTAAAAAAAA 495 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||