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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1494 fasta sequence
[CCAAAAGTATAATCAAGCAAAGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACGATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGAGCGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAAGCCGCCCGTGGCGGCGCCGGCGTTGGGGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTATGAGTGTAAGTGGTTAATTTTCTGTTGCAGCATAATTAAG]
[+] EMBL AK070656 [CCAAAAGTATAATCAAGCAAAGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACGATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGAGCGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAAGCCGCCCGTGGCGGCGCCGGCGTTGGGGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTATGAGTGTAAGTGGTTAATTTTCTGTTGCAGCATAATTAAG]
consensusID : consensus_2157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1463 fasta sequence
[AGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACCATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGACGGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAACCGCCCGTGGCCGGGGCCGGCGTTGGAGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AB023819 [AGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACCATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGACGGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAACCGCCCGTGGCCGGGGCCGGCGTTGGAGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2157#0 CCAAAAGTATAATCAAGCAAAGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGC 60
consensus_2157#1 --------------------AGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGC 40
****************************************
consensus_2157#0 TAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACGATGGCGAAGGAG 120
consensus_2157#1 TAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACCATGGCGAAGGAG 100
*********************************************** ************
consensus_2157#0 GAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCG 180
consensus_2157#1 GAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCG 160
************************************************************
consensus_2157#0 GCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACG 240
consensus_2157#1 GCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACG 220
************************************************************
consensus_2157#0 GAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAG 300
consensus_2157#1 GAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAG 280
************************************************************
consensus_2157#0 GCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAG 360
consensus_2157#1 GCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAG 340
************************************************************
consensus_2157#0 GCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTC 420
consensus_2157#1 GCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTC 400
************************************************************
consensus_2157#0 CCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCAC 480
consensus_2157#1 CCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCAC 460
************************************************************
consensus_2157#0 CTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTC 540
consensus_2157#1 CTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTC 520
************************************************************
consensus_2157#0 AGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATC 600
consensus_2157#1 AGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATC 580
************************************************************
consensus_2157#0 TGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCG 660
consensus_2157#1 TGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCG 640
************************************************************
consensus_2157#0 CGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGAC 720
consensus_2157#1 CGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGAC 700
************************************************************
consensus_2157#0 GTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAG 780
consensus_2157#1 GTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAG 760
************************************************************
consensus_2157#0 CACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGAGCGCGCACGGCGCC 840
consensus_2157#1 CACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGACGGCGCACGGCGCC 820
********************************************** ************
consensus_2157#0 CGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTG 900
consensus_2157#1 CGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTG 880
************************************************************
consensus_2157#0 CTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAAGCCG 960
consensus_2157#1 CTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAA-CCG 939
******************************************************** ***
consensus_2157#0 CCCGTGGC-GGCGCCGGCGTTGGGGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGT 1019
consensus_2157#1 CCCGTGGCCGGGGCCGGCGTTGGAGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGT 999
******** ** *********** ************************************
consensus_2157#0 GGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGA 1079
consensus_2157#1 GGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGA 1059
************************************************************
consensus_2157#0 CATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCG 1139
consensus_2157#1 CATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCG 1119
************************************************************
consensus_2157#0 CTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTAC 1199
consensus_2157#1 CTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTAC 1179
************************************************************
consensus_2157#0 CATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTA 1259
consensus_2157#1 CATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTA 1239
************************************************************
consensus_2157#0 ATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCAT 1319
consensus_2157#1 ATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCAT 1299
************************************************************
consensus_2157#0 ATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGT 1379
consensus_2157#1 ATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGT 1359
************************************************************
consensus_2157#0 CGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTC 1439
consensus_2157#1 CGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTC 1419
************************************************************
consensus_2157#0 TCTGTTGCGTATTTATGAGTGTAAGTGGTTAATTTTCTGTTGCAGCATAATTAAG 1494
consensus_2157#1 TCTGTTGCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 1463
*************** * ** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||