These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [TTATTAACCCTGATAGGTCAATCTAGCCTCCATGTTCGCTGTCCAAAAATGCAAGACCGACACTTCTGCCTTGATTGCGATATTTACATCCATGAGAGCTTGCACAATTGCCCAGGTTGCGAGAGTCAGCGTAGTTCTTCATAGGGATGCCACTTGTGGTGTTAATCTTTGTCTTTTTAACTCAAGAAGCTACCCGTTGCTGTAAGCTTTCTCGTACACTGACATTGGTAGGCGATGTTGTGAGGTAATCAAACAGTGTACAGATGATATAGTGCCCGGCCTCCATTTTGTTGACGCTTCCTGTTCATTTAGATGGAGTAGCTAGTTAAGCTATTTTGATACAGAGTACTGGTCAAAGAGTTGTTGAAGCCATAGCATTGTTGCTGAGGGGAGGTGTTAGAAATGTACATGCGACTGAAAAGTGAAAACTTGTAACTCTTGCCGTTTTTCTGAGGCAAAGATGTATTCTTTCAGTGTCAAAAAAAAAA] [+] EMBL BI812123 [TTATTAACCCTGATAGGTCAATCTAGCCTCCATGTTCGCTGTCCAAAAATGCAAGACCGACACTTCTGCCTTGATTGCGATATTTACATCCATGAGAGCTTGCACAATTGCCCAGGTTGCGAGAGTCAGCGTAGTTCTTCATAGGGATGCCACTTGTGGTGTTAATCTTTGTCTTTTTAACTCAAGAAGCTACCCGTTGCTGTAAGCTTTCTCGTACACTGACATTGGTAGGCGATGTTGTGAGGTAATCAAACAGTGTACAGATGATATAGTGCCCGGCCTCCATTTTGTTGACGCTTCCTGTTCATTTAGATGGAGTAGCTAGTTAAGCTATTTTGATACAGAGTACTGGTCAAAGAGTTGTTGAAGCCATAGCATTGTTGCTGAGGGGAGGTGTTAGAAATGTACATGCGACTGAAAAGTGAAAACTTGTAACTCTTGCCGTTTTTCTGAGGCAAAGATGTATTCTTTCAGTGTCAAAAAAAAAA] consensusID : consensus_2163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 121 fasta sequence [TTTTTTTTTGACTATGACACTGAAAGAATACATCTTTGCCTCAAAAAAACGGCAAGAGTTACAAGTTTTCATTTTTCAGTCGCATTGTACATTTCTAACACCTCCCCTTGTCTCGTCCTCT] [+] EMBL CA760738 [TTTTTTTTTGACTATGACACTGAAAGAATACATCTTTGCCTCAAAAAAACGGCAAGAGTTACAAGTTTTCATTTTTCAGTCGCATTGTACATTTCTAACACCTCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2163#0 TTATTAACCCTGATAGGTCAATCTAGCCTCCATGTTCGCTGTCCAAAAATGCAAGACCGA 60 consensus_2163#1 ------------------------------------------------------------ consensus_2163#0 CACTTCTGCCTTGATTGCGATATTTACATCCATGAGAGCTTGCACAATTGCCCAGGTTGC 120 consensus_2163#1 ---TTTTTTTTTGACTATGACACTGA-AAGAATACATCTTTGC---CTCAAAAAAACGGC 53 ** * **** * ** * * * * ** **** * * ** consensus_2163#0 GAGAGTCAGCGTAGTTCTTCATAGGGATGCCACTTGTGGTGTTAATCTTTGTCTTTTTAA 180 consensus_2163#1 AAGAGTTA---CAAGTTTTCATT----TTTCAGTCGCATTGTACATTTCTAACACCTCCC 106 ***** * * * ***** * ** * * *** ** * * * * consensus_2163#0 CTCAAGAAGCTACCCGTTGCTGTAAGCTTTCTCGTACACTGACATTGGTAGGCGATGTTG 240 consensus_2163#1 CTTGTCTCGTCCTCT--------------------------------------------- 121 ** * * consensus_2163#0 TGAGGTAATCAAACAGTGTACAGATGATATAGTGCCCGGCCTCCATTTTGTTGACGCTTC 300 consensus_2163#1 ------------------------------------------------------------ consensus_2163#0 CTGTTCATTTAGATGGAGTAGCTAGTTAAGCTATTTTGATACAGAGTACTGGTCAAAGAG 360 consensus_2163#1 ------------------------------------------------------------ consensus_2163#0 TTGTTGAAGCCATAGCATTGTTGCTGAGGGGAGGTGTTAGAAATGTACATGCGACTGAAA 420 consensus_2163#1 ------------------------------------------------------------ consensus_2163#0 AGTGAAAACTTGTAACTCTTGCCGTTTTTCTGAGGCAAAGATGTATTCTTTCAGTGTCAA 480 consensus_2163#1 ------------------------------------------------------------ consensus_2163#0 AAAAAAAA 488 consensus_2163#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||