These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTACGNGGAATCATCCATTCTTTCTTGCCATTTCTGNGGTATTCTTCTTTCTTGGNCAGGNCAGCACAGGTGAGAGATGGTACCTCTCACACCTGTGNTGTCCTNTCCAAGAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGNCGNTCATGNGGTAGTCCATGTNATATAGAATCACAACAAGNAGGNTCACCAAACTTTTCCCTGTTGGAAAATNTTATATGCTTGGGCAGCATTGACANTGGTTNTGAAGGCANGTTGGCAANTGGCAAGCATAGTGGCGTTTAGCCCTTCTCCTCTGGCTGTAATTATTCCCNAAATTTTGGTAT] [+] EMBL AU175216 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTACGNGGAATCATCCATTCTTTCTTGCCATTTCTGNGGTATTCTTCTTTCTTGGNCAGGNCAGCACAGGTGAGAGATGGTACCTCTCACACCTGTGNTGTCCTNTCCAAGAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGNCGNTCATGNGGTAGTCCATGTNATATAGAATCACAACAAGNAGGNTCACCAAACTTTTCCCTGTTGGAAAATNTTATATGCTTGGGCAGCATTGACANTGGTTNTGAAGGCANGTTGGCAANTGGCAAGCATAGTGGCGTTTAGCCCTTCTCCTCTGGCTGTAATTATTCCCNAAATTTTGGTAT] consensusID : consensus_2172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [AAACAAGAAACCCAAAAAGCAGAAAAACAAAGAGAAGATGAAGAACAAAGAAAAAAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGACGATCATGAGGTAGTCCATGTCATATAGAATCACAACAAGTAGGATCACCAAACTTTCCCTGTTGGAAAATGATATATGCTTGGGCAGCATTGACAGTGGATGTGAAGGCAAGTTGGCAAATGGCAAGCATAGTGGCGTCTTAGCCCTCCTCCTCTGGCTGTAATTATTCCCTAATTTTTGTATCTTCTCTTTTTCTTCCCTGGATGCATAATCATTGTTGTATACTGATTTTGAAATGCAAAAAAA] [+] EMBL AU070904 [AAACAAGAAACCCAAAAAGCAGAAAAACAAAGAGAAGATGAAGAACAAAGAAAAAAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGACGATCATGAGGTAGTCCATGTCATATAGAATCACAACAAGTAGGATCACCAAACTTTCCCTGTTGGAAAATGATATATGCTTGGGCAGCATTGACAGTGGATGTGAAGGCAAGTTGGCAAATGGCAAGCATAGTGGCGTCTTAGCCCTCCTCCTCTGGCTGTAATTATTCCCTAATTTTTGTATCTTCTCTTTTTCTTCCCTGGATGCATAATCATTGTTGTATACTGATTTTGAAATGCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2172#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTACGNGGAATCATCC 60 consensus_2172#1 ------------------------------------------------------------ consensus_2172#0 ATTCTTTCTTGCCATTTCTGNGGTATTCTTCTTTCTTGGNCAGGNCAGCACAGGTGAGAG 120 consensus_2172#1 -------------------------------------AAACAAGA-AACCCAAAAAGCAG 22 ** * * * ** ** consensus_2172#0 ATGGTACCTCTCACACCTGTGNTGTCCTNTCCAAGAAAGAAGAAGAAGAAGAAAAAAGAG 180 consensus_2172#1 AAAA-ACAAAGAGAAGATGAAGAA-CAAAGAAAAAAAAGAAGAAGAAGAAGAAAAAAGAG 80 * ** * ** * ** ************************* consensus_2172#0 AAGAAAAAGGGGAGAAGAAAAACGGNCGNTCATGNGGTAGTCCATGTNATATAGAATCAC 240 consensus_2172#1 AAGAAAAAGGGGAGAAGAAAAACGGACGATCATGAGGTAGTCCATGTCATATAGAATCAC 140 ************************* ** ***** ************ ************ consensus_2172#0 AACAAGNAGGNTCACCAAACTTTTCCCTGTTGGAAAATNTTATATGCTTGGGCAGCATTG 300 consensus_2172#1 AACAAGTAGGATCACCAAACTTT-CCCTGTTGGAAAATGATATATGCTTGGGCAGCATTG 199 ****** *** ************ ************** ******************** consensus_2172#0 ACANTGGTTNTGAAGGCANGTTGGCAANTGGCAAGCATAGTGGCGT-TTAGCCCTTCTCC 359 consensus_2172#1 ACAGTGGATGTGAAGGCAAGTTGGCAAATGGCAAGCATAGTGGCGTCTTAGCCCTCCTCC 259 *** *** * ******** ******** ****************** ******** **** consensus_2172#0 TCTGGCTGTAATTATTCCCNAAATTTTGGTAT---------------------------- 391 consensus_2172#1 TCTGGCTGTAATTATTCCCTAA-TTTTTGTATCTTCTCTTTTTCTTCCCTGGATGCATAA 318 ******************* ** **** **** consensus_2172#0 ----------------------------------- consensus_2172#1 TCATTGTTGTATACTGATTTTGAAATGCAAAAAAA 353 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||