cluster # 2173

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Oryza sativa
cluster # 2173 cluster # 2173 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2173#0 length = 498 sequences # 1

consensus_2173#1 length = 271 sequences # 1

consensusID : consensus_2173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [TCAAAATGCCTTTCTGTTGATGTTGGCATATACATCATGTTGTGCAGCTAGAAACGATGAAAGCGTCAGTACTGTTCTATTGCTCGTTAGAGTTTGCTTTAAACAATGAATATCTAATTATCTTACTTATAGAACCGGGGTCTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGCTAACAACAACCTAACGTAGATCAACCGGGACAAGCTCTACAGGAGAACGTGGCGACAAAGCTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGCTGTTCCTAAGGTGAGTTGGGTGGGCTTCAGTTGTATAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTGCTCGCCCCGCACATCCTCTCCGCCGCCGCCGCCCCCTTCCTGGTGAAGAGGAACAGCACCCTGTCGCACGCCAGCTTGAACAGCGCCAGGCACGCGAAGAAGAGGCTGA]

[+] EMBL CK085113             [TCAAAATGCCTTTCTGTTGATGTTGGCATATACATCATGTTGTGCAGCTAGAAACGATGAAAGCGTCAGTACTGTTCTATTGCTCGTTAGAGTTTGCTTTAAACAATGAATATCTAATTATCTTACTTATAGAACCGGGGTCTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGCTAACAACAACCTAACGTAGATCAACCGGGACAAGCTCTACAGGAGAACGTGGCGACAAAGCTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGCTGTTCCTAAGGTGAGTTGGGTGGGCTTCAGTTGTATAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTGCTCGCCCCGCACATCCTCTCCGCCGCCGCCGCCCCCTTCCTGGTGAAGAGGAACAGCACCCTGTCGCACGCCAGCTTGAACAGCGCCAGGCACGCGAAGAAGAGGCTGA]




>consensus_2173#0
TCAAAATGCCTTTCTGTTGATGTTGGCATATACATCATGTTGTGCAGCTAGAAACGATGA
AAGCGTCAGTACTGTTCTATTGCTCGTTAGAGTTTGCTTTAAACAATGAATATCTAATTA
TCTTACTTATAGAACCGGGGTCTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGT
ACTTCCTCGGTAACAGCCAGGCTAACAACAACCTAACGTAGATCAACCGGGACAAGCTCT
ACAGGAGAACGTGGCGACAAAGCTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGCTGTT
CCTAAGGTGAGTTGGGTGGGCTTCAGTTGTATAGCAGCACTAGGAAAGTAGTGAAGCTGC
TGCTTGCCAGTACGAGGATCCAGCCCTTGCTCGCCCCGCACATCCTCTCCGCCGCCGCCG
CCCCCTTCCTGGTGAAGAGGAACAGCACCCTGTCGCACGCCAGCTTGAACAGCGCCAGGC
ACGCGAAGAAGAGGCTGA

consensusID : consensus_2173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGNTAACAACAACCTAACGTAGATCAACCGGGACAAGNTNTACAGGAGAACGTGGCGACAAAGNTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGNTGTTCCTAAGGTGAGTTGGGTGGGNTTCAGTTGTNTAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTG]

[-] EMBL C98678               [TTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGNTAACAACAACCTAACGTAGATCAACCGGGACAAGNTNTACAGGAGAACGTGGCGACAAAGNTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGNTGTTCCTAAGGTGAGTTGGGTGGGNTTCAGTTGTNTAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTG]




>consensus_2173#1
TTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAATACCGGCACTTTTATTTCCAAATCACTA
GTACTTCCTCGGTAACAGCCAGGNTAACAACAACCTAACGTAGATCAACCGGGACAAGNT
NTACAGGAGAACGTGGCGACAAAGNTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGNTG
TTCCTAAGGTGAGTTGGGTGGGNTTCAGTTGTNTAGCAGCACTAGGAAAGTAGTGAAGCT
GCTGCTTGCCAGTACGAGGATCCAGCCCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2173#0      TCAAAATGCCTTTCTGTTGATGTTGGCATATACATCATGTTGTGCAGCTAGAAACGATGA 60
consensus_2173#1      ------------------------------------------------------------
                                                                                  

consensus_2173#0      AAGCGTCAGTACTGTTCTATTGCTCGTTAGAGTTTGCTTTAAACAATGAATATCTAATTA 120
consensus_2173#1      ----------------------------------------------------------TT 2
                                                                                * 

consensus_2173#0      TCTTACTTATAGAACCGGGGTCTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGT 180
consensus_2173#1      TTTTTTTTTTTTTTTTTTTTTTTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGT 62
                      * **  ** *          * **************************************

consensus_2173#0      ACTTCCTCGGTAACAGCCAGGCTAACAACAACCTAACGTAGATCAACCGGGACAAGCTCT 240
consensus_2173#1      ACTTCCTCGGTAACAGCCAGGNTAACAACAACCTAACGTAGATCAACCGGGACAAGNTNT 122
                      ********************* ********************************** * *

consensus_2173#0      ACAGGAGAACGTGGCGACAAAGCTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGCTGTT 300
consensus_2173#1      ACAGGAGAACGTGGCGACAAAGNTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGNTGTT 182
                      ********************** ******************************** ****

consensus_2173#0      CCTAAGGTGAGTTGGGTGGGCTTCAGTTGTATAGCAGCACTAGGAAAGTAGTGAAGCTGC 360
consensus_2173#1      CCTAAGGTGAGTTGGGTGGGNTTCAGTTGTNTAGCAGCACTAGGAAAGTAGTGAAGCTGC 242
                      ******************** ********* *****************************

consensus_2173#0      TGCTTGCCAGTACGAGGATCCAGCCCTTGCTCGCCCCGCACATCCTCTCCGCCGCCGCCG 420
consensus_2173#1      TGCTTGCCAGTACGAGGATCCAGCCCTTG------------------------------- 271
                      *****************************                               

consensus_2173#0      CCCCCTTCCTGGTGAAGAGGAACAGCACCCTGTCGCACGCCAGCTTGAACAGCGCCAGGC 480
consensus_2173#1      ------------------------------------------------------------
                                                                                  

consensus_2173#0      ACGCGAAGAAGAGGCTGA 498
consensus_2173#1      ------------------