cluster # 220

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Oryza sativa
cluster # 220 cluster # 220 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_220#0 length = 369 sequences # 1

consensus_220#1 length = 312 sequences # 1

consensusID : consensus_220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [GCCGGCCGGCAGGGGAGGAGCGTGACGGGCGCGCGACGGCCGGCGAGGGAGGAGCGCGGCTGAGAGGAGGGTTGGCGCGATGGGTGGCGGTCGGCGACGCGGAGCACGACGACGACTTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTTGCCTCCNNCTCCTCTTCCCCGCCGATCTTCCTTCGCCGGCCCGCGAGTGCGCGTGGAGAGGAAAGAAANGTCAGCGGCCCGGCCCGGCAGAATANCCCGGTGAACCCATTCCTTTCCCTTCCATTTTCTTTGCT]

[+] EMBL AU184848             [GCCGGCCGGCAGGGGAGGAGCGTGACGGGCGCGCGACGGCCGGCGAGGGAGGAGCGCGGCTGAGAGGAGGGTTGGCGCGATGGGTGGCGGTCGGCGACGCGGAGCACGACGACGACTTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTTGCCTCCNNCTCCTCTTCCCCGCCGATCTTCCTTCGCCGGCCCGCGAGTGCGCGTGGAGAGGAAAGAAANGTCAGCGGCCCGGCCCGGCAGAATANCCCGGTGAACCCATTCCTTTCCCTTCCATTTTCTTTGCT]




>consensus_220#0
GCCGGCCGGCAGGGGAGGAGCGTGACGGGCGCGCGACGGCCGGCGAGGGAGGAGCGCGGC
TGAGAGGAGGGTTGGCGCGATGGGTGGCGGTCGGCGACGCGGAGCACGACGACGACTTGG
GGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGT
GGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTTGCCTC
CNNCTCCTCTTCCCCGCCGATCTTCCTTCGCCGGCCCGCGAGTGCGCGTGGAGAGGAAAG
AAANGTCAGCGGCCCGGCCCGGCAGAATANCCCGGTGAACCCATTCCTTTCCCTTCCATT
TTCTTTGCT

consensusID : consensus_220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [TTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTGCCTCCCGCTCCTCTCCCCGCCGATCTCCCTCGCCGGCCGGGAGTGCGCGTGGAGAGGAAGAAGGTCAGCGGCCGGCCGGCAGAATAGCCGCTCACAGCCTCACACCCGCTCAAATTCTTCACAATCTATGGGCTGTGGCTANTGGCCGCAGTACAGCTATGGGGGATGCCATCCTGCTGCAGANCAACCACAT]

[+] EMBL C74355               [TTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTGCCTCCCGCTCCTCTCCCCGCCGATCTCCCTCGCCGGCCGGGAGTGCGCGTGGAGAGGAAGAAGGTCAGCGGCCGGCCGGCAGAATAGCCGCTCACAGCCTCACACCCGCTCAAATTCTTCACAATCTATGGGCTGTGGCTANTGGCCGCAGTACAGCTATGGGGGATGCCATCCTGCTGCAGANCAACCACAT]




>consensus_220#1
TTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCA
GAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTGC
CTCCCGCTCCTCTCCCCGCCGATCTCCCTCGCCGGCCGGGAGTGCGCGTGGAGAGGAAGA
AGGTCAGCGGCCGGCCGGCAGAATAGCCGCTCACAGCCTCACACCCGCTCAAATTCTTCA
CAATCTATGGGCTGTGGCTANTGGCCGCAGTACAGCTATGGGGGATGCCATCCTGCTGCA
GANCAACCACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_220#0      GCCGGCCGGCAGGGGAGGAGCGTGACGGGCGCGCGACGGCCGGCGAGGGAGGAGCGCGGC 60
consensus_220#1      ------------------------------------------------------------
                                                                                 

consensus_220#0      TGAGAGGAGGGTTGGCGCGATGGGTGGCGGTCGGCGACGCGGAGCACGACGACGACTTGG 120
consensus_220#1      --------------------------------------------------------TTGG 4
                                                                             ****

consensus_220#0      GGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGT 180
consensus_220#1      GGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGT 64
                     ************************************************************

consensus_220#0      GGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTTGCCTC 240
consensus_220#1      GGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTT-GCCTC 123
                     ****************************************************** *****

consensus_220#0      CNNCTCCTCTTCCCCGCCGATCTTCCTTCGCCGGCCCGCGAGTGCGCGTGGAGAGGAAAG 300
consensus_220#1      CCGCTCCTCT-CCCCGCCGATCT-CCCTCGCCGGCCGG-GAGTGCGCGTGGAGAGGAAG- 179
                     *  ******* ************ ** ********* * *******************  

consensus_220#0      AAANGTCAGCGGCCCGGCCCGGCAGAATANCC--------CGGTGAACCCATTCCTTTCC 352
consensus_220#1      -AAGGTCAGCGGCCGG--CCGGCAGAATAGCCGCTCACAGCCTCACACCCGCTCAAATTC 236
                      ** ********** *  *********** **        *     ****  **   * *

consensus_220#0      CTTCCATTTTCTTTGCT------------------------------------------- 369
consensus_220#1      TTCACAATCTATGGGCTGTGGCTANTGGCCGCAGTACAGCTATGGGGGATGCCATCCTGC 296
                      *  ** * * *  ***                                           

consensus_220#0      ----------------
consensus_220#1      TGCAGANCAACCACAT 312