These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [GCCGGCCGGCAGGGGAGGAGCGTGACGGGCGCGCGACGGCCGGCGAGGGAGGAGCGCGGCTGAGAGGAGGGTTGGCGCGATGGGTGGCGGTCGGCGACGCGGAGCACGACGACGACTTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTTGCCTCCNNCTCCTCTTCCCCGCCGATCTTCCTTCGCCGGCCCGCGAGTGCGCGTGGAGAGGAAAGAAANGTCAGCGGCCCGGCCCGGCAGAATANCCCGGTGAACCCATTCCTTTCCCTTCCATTTTCTTTGCT] [+] EMBL AU184848 [GCCGGCCGGCAGGGGAGGAGCGTGACGGGCGCGCGACGGCCGGCGAGGGAGGAGCGCGGCTGAGAGGAGGGTTGGCGCGATGGGTGGCGGTCGGCGACGCGGAGCACGACGACGACTTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTTGCCTCCNNCTCCTCTTCCCCGCCGATCTTCCTTCGCCGGCCCGCGAGTGCGCGTGGAGAGGAAAGAAANGTCAGCGGCCCGGCCCGGCAGAATANCCCGGTGAACCCATTCCTTTCCCTTCCATTTTCTTTGCT] consensusID : consensus_220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [TTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTGCCTCCCGCTCCTCTCCCCGCCGATCTCCCTCGCCGGCCGGGAGTGCGCGTGGAGAGGAAGAAGGTCAGCGGCCGGCCGGCAGAATAGCCGCTCACAGCCTCACACCCGCTCAAATTCTTCACAATCTATGGGCTGTGGCTANTGGCCGCAGTACAGCTATGGGGGATGCCATCCTGCTGCAGANCAACCACAT] [+] EMBL C74355 [TTGGGGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGTGGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTGCCTCCCGCTCCTCTCCCCGCCGATCTCCCTCGCCGGCCGGGAGTGCGCGTGGAGAGGAAGAAGGTCAGCGGCCGGCCGGCAGAATAGCCGCTCACAGCCTCACACCCGCTCAAATTCTTCACAATCTATGGGCTGTGGCTANTGGCCGCAGTACAGCTATGGGGGATGCCATCCTGCTGCAGANCAACCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_220#0 GCCGGCCGGCAGGGGAGGAGCGTGACGGGCGCGCGACGGCCGGCGAGGGAGGAGCGCGGC 60 consensus_220#1 ------------------------------------------------------------ consensus_220#0 TGAGAGGAGGGTTGGCGCGATGGGTGGCGGTCGGCGACGCGGAGCACGACGACGACTTGG 120 consensus_220#1 --------------------------------------------------------TTGG 4 **** consensus_220#0 GGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGT 180 consensus_220#1 GGCCGCCGCTCGCTTGCTCCTGGGGGATGGAAGAGCAGCACGCAGCCACGCACTCAGAGT 64 ************************************************************ consensus_220#0 GGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTTTGCCTC 240 consensus_220#1 GGAGGCGGTGGGTATCCGGCGACGTCCCGAGGCGGGCGAGGACGGCGGTGGCTT-GCCTC 123 ****************************************************** ***** consensus_220#0 CNNCTCCTCTTCCCCGCCGATCTTCCTTCGCCGGCCCGCGAGTGCGCGTGGAGAGGAAAG 300 consensus_220#1 CCGCTCCTCT-CCCCGCCGATCT-CCCTCGCCGGCCGG-GAGTGCGCGTGGAGAGGAAG- 179 * ******* ************ ** ********* * ******************* consensus_220#0 AAANGTCAGCGGCCCGGCCCGGCAGAATANCC--------CGGTGAACCCATTCCTTTCC 352 consensus_220#1 -AAGGTCAGCGGCCGG--CCGGCAGAATAGCCGCTCACAGCCTCACACCCGCTCAAATTC 236 ** ********** * *********** ** * **** ** * * consensus_220#0 CTTCCATTTTCTTTGCT------------------------------------------- 369 consensus_220#1 TTCACAATCTATGGGCTGTGGCTANTGGCCGCAGTACAGCTATGGGGGATGCCATCCTGC 296 * ** * * * *** consensus_220#0 ---------------- consensus_220#1 TGCAGANCAACCACAT 312 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||