These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [TTTTGATATGAAAGGATATGACCAATAAAAAGAGCAGTACATCAGTCAAAAGAAAGAAAGTGCAAAGTAACTAATCGGCACAAAAATTACAGTAGTTAGTATATGTCATTGCACAGAAGGTTATCTGACCATCAGGGAATTTTTCTTGAATAGTAGTGAGGTTTGACTTGCTCAACAAGAACTCCATAATCTTTCCAGCTCTGGAGTGAAGTCTTGTGTATGTTCCTCTCATGACATGACATAGCAAAGCAGTTATCCCATCTATATGTACGGGTGATGGATTTTTAGCAGCCTCAAGTAGAACATTCCTTACACCTAACAACCAAAGGAAAAAAAGGAAGAGTAGCTTAGAATGACAAAAACATAAAAGTACCTATGCAAACAAGACCAGCAATCTTCACAACGCCCCCATTTTTATCGCATTGGCTAAGGCTTAAACCCTTCTACTTACTTGGTTGTATGAATATTTTCCTAAGCAAGAGAAGGGATATGACACATAAAAGAACATGCCTCAACAAACAGACTGCTAGGTAGTTGCATAAAAAAGTAGTTCTAATTATCTCANAAAAGAAAAAGTAGTACTAAGAGGCTAAAGACTTAATATAACCTGAAGTTACACAATTCACTTAGATACAGAATTTAGCATCATCAACATGGTGTAAGCAAGCANAAGTAC] [+] EMBL CA761353 [TTTTGATATGAAAGGATATGACCAATAAAAAGAGCAGTACATCAGTCAAAAGAAAGAAAGTGCAAAGTAACTAATCGGCACAAAAATTACAGTAGTTAGTATATGTCATTGCACAGAAGGTTATCTGACCATCAGGGAATTTTTCTTGAATAGTAGTGAGGTTTGACTTGCTCAACAAGAACTCCATAATCTTTCCAGCTCTGGAGTGAAGTCTTGTGTATGTTCCTCTCATGACATGACATAGCAAAGCAGTTATCCCATCTATATGTACGGGTGATGGATTTTTAGCAGCCTCAAGTAGAACATTCCTTACACCTAACAACCAAAGGAAAAAAAGGAAGAGTAGCTTAGAATGACAAAAACATAAAAGTACCTATGCAAACAAGACCAGCAATCTTCACAACGCCCCCATTTTTATCGCATTGGCTAAGGCTTAAACCCTTCTACTTACTTGGTTGTATGAATATTTTCCTAAGCAAGAGAAGGGATATGACACATAAAAGAACATGCCTCAACAAACAGACTGCTAGGTAGTTGCATAAAAAAGTAGTTCTAATTATCTCANAAAAGAAAAAGTAGTACTAAGAGGCTAAAGACTTAATATAACCTGAAGTTACACAATTCACTTAGATACAGAATTTAGCATCATCAACATGGTGTAAGCAAGCANAAGTAC] consensusID : consensus_2201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TTTTTTTTTTAAGCAACTCTTTTTTATCTATCTCATCGCACAACCTATGAATCAGCCCAGTTATGACTTCACGAATAGTAGAAGACCCATCAGGGAATTTTTCTGGAATAGTAGTGAGGTTTGACTGGGCTCAAACAAGAACTCCATAATCTTTCCAGCTCGTGGAGTGAAGTCTGGGGTATGTTCCTCTCATGACAGTGAGCATAGCAAAGCAGTTATCCCATCTATATGTACGGGGTGATGGATTTTTAGCACGCCTCAAGTAGAACATTCCTTACACCTTCTATTGGTGGACCATGGGGTGGCATTCCTCAGAACCAAATGAACACCAGATTCAGCATAAACATCTCTAACATAATCCTTGGGAAAAAATCTCAGGGACGCGGTGGATCCTGAGAACCTGAACAACATCTTTAACTAGATACTTTGGCGCAGTCACATCATTACATATGACCATGACGTGAAAGACCGTGTCC] [-] EMBL BI812047 [TTTTTTTTTTAAGCAACTCTTTTTTATCTATCTCATCGCACAACCTATGAATCAGCCCAGTTATGACTTCACGAATAGTAGAAGACCCATCAGGGAATTTTTCTGGAATAGTAGTGAGGTTTGACTGGGCTCAAACAAGAACTCCATAATCTTTCCAGCTCGTGGAGTGAAGTCTGGGGTATGTTCCTCTCATGACAGTGAGCATAGCAAAGCAGTTATCCCATCTATATGTACGGGGTGATGGATTTTTAGCACGCCTCAAGTAGAACATTCCTTACACCTTCTATTGGTGGACCATGGGGTGGCATTCCTCAGAACCAAATGAACACCAGATTCAGCATAAACATCTCTAACATAATCCTTGGGAAAAAATCTCAGGGACGCGGTGGATCCTGAGAACCTGAACAACATCTTTAACTAGATACTTTGGCGCAGTCACATCATTACATATGACCATGACGTGAAAGACCGTGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2201#0 TTTTGATATGAAAGGATATGACCAATAAAAAGAGCAGTACATCAGTCAAAAGAAAGAAAG 60 consensus_2201#1 ---------------------------------------TTTTTTTTTTAAGCAACTCTT 21 * * *** ** consensus_2201#0 TGCAAAGTAACTAATCGGCACAAAAATTACAGTAGTTAGTATATGTCATTGCACAGAAGG 120 consensus_2201#1 TTTTATCTATCTCATCG-CACAACCTATGAATCAGCCCAGTTATG--ACTTCACGAATAG 78 * * ** ** **** ***** * * ** **** * * *** * * consensus_2201#0 TTATCTGACCATCAGGGAATTTTTCTTGAATAGTAGTGAGGTTTGACTTG-CTCAA-CAA 178 consensus_2201#1 TAGAAGACCCATCAGGGAATTTTTCTGGAATAGTAGTGAGGTTTGACTGGGCTCAAACAA 138 * ****************** ********************* * ***** *** consensus_2201#0 GAACTCCATAATCTTTCCAGCTC-TGGAGTGAAGTCTTGTGTATGTTCCTCTCATGACA- 236 consensus_2201#1 GAACTCCATAATCTTTCCAGCTCGTGGAGTGAAGTCTGGGGTATGTTCCTCTCATGACAG 198 *********************** ************* * ******************* consensus_2201#0 TGA-CATAGCAAAGCAGTTATCCCATCTATATGTACGGG-TGATGGATTTTTAGCA-GCC 293 consensus_2201#1 TGAGCATAGCAAAGCAGTTATCCCATCTATATGTACGGGGTGATGGATTTTTAGCACGCC 258 *** *********************************** **************** *** consensus_2201#0 TCAAGTAGAACATTCCTTACACCTAACAACCAAAGGAAAAAAAGGAAGAGTAGCTTAGAA 353 consensus_2201#1 TCAAGTAGAACATTCCTTACACCTT-CTATTGGTGGACCATGGGGTGGCATTCCTCAGAA 317 ************************ * * *** * ** * * ** **** consensus_2201#0 TGACAAAAACATAAAAGTACCTATGCAAACAAGACCAGCA--ATCTTCACAACGCCCCCA 411 consensus_2201#1 CCAAATGAACACCAGATT--CAGCATAAACATCTCTAACATAATCCTTGGGAAAA----A 371 * * **** * * * * ***** * * ** *** * * * consensus_2201#0 TTTTTATCGCATTGGCTAAGGCTTAAACCCTTCTACTTACTTGGTTGTATGAATATTTT- 470 consensus_2201#1 ATCTCAGGGACGCGGTGGATCCTGAGAACCTG--AACAACATCTTTAACTAGATACTTTG 429 * * * * ** * ** * * *** * ** * ** * *** *** consensus_2201#0 -CCTAAGCAAGAGAAGGGATATGAC----ACATAAAAGAACATGCCTCAACAAACAGACT 525 consensus_2201#1 GCGCAGTCACATCATTACATATGACCATGACGTGAAAGACCGTGTCC------------- 476 * * ** * ******* ** * ***** * ** * consensus_2201#0 GCTAGGTAGTTGCATAAAAAAGTAGTTCTAATTATCTCANAAAAGAAAAAGTAGTACTAA 585 consensus_2201#1 ------------------------------------------------------------ consensus_2201#0 GAGGCTAAAGACTTAATATAACCTGAAGTTACACAATTCACTTAGATACAGAATTTAGCA 645 consensus_2201#1 ------------------------------------------------------------ consensus_2201#0 TCATCAACATGGTGTAAGCAAGCANAAGTAC 676 consensus_2201#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||