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Oryza sativa
cluster # 2202 cluster # 2202       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2202#0 length = 1779 sequences # 1  
consensus_2202#1 length = 560 sequences # 1  

consensusID : consensus_2202#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1779
fasta sequence
                              [TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTCCTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGGACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGGGTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCTCAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGACGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGCTGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCGTCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATCTTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTCAACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGCAAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTCGTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAGACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTCAAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATCGTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTGTGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCGTCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGAGAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCTCAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAAGACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCAAGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAACCTCGACACGGAGCATGTATCTGCGATACTGGGTCTAGCTGACTTGCTAGATCTCAAGAAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAGAGGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAGAAAT]

[+] EMBL AK108671             [TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTCCTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGGACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGGGTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCTCAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGACGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGCTGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCGTCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATCTTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTCAACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGCAAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTCGTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAGACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTCAAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATCGTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTGTGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCGTCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGAGAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCTCAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAAGACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCAAGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAACCTCGACACGGAGCATGTATCTGCGATACTGGGTCTAGCTGACTTGCTAGATCTCAAGAAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAGAGGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAGAAAT]


>consensus_2202#0 TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTC CTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGG ACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGG GTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCT CAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGA CGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGC TGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCG TCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATC TTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTC AACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGC AAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTC GTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAG ACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTC AAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATC GTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTG TGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCG TCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGA GAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCT CAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAA GACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCA AGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCC GGTGACCGGTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAAC CTCGACACGGAGCATGTATCTGCGATACTGGGTCTAGCTGACTTGCTAGATCTCAAGAAG CTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGATGCCGTGGCTGCA AGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAG AGGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGC GCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACG AATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGCACCTTAATGTAA TGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTT ACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAGAAAT



consensusID : consensus_2202#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence
                              [TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGCCTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTACATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTTAGAATCGAGTTGTTTTTTACAAAAAAAAAAAA]

[+] EMBL BQ172816             [TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGCCTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTACATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTTAGAATCGAGTTGTTTTTTACAAAAAAAAAAAA]


>consensus_2202#1 TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGGCCGGTGACCGGT ATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGCCTACGCAACCTC GCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTACATCTCACACGC AAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAATGGATGCCGTGG CTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGACAG TGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAA GATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTG ATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGCTGGTTGC ACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTTAGAATCGAGTTG TTTTTTACAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2202#0      TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTC 60
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      CTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGG 120
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      ACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGG 180
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      GTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCT 240
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      CAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGA 300
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      CGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGC 360
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      TGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCG 420
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      TCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATC 480
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      TTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTC 540
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      AACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGC 600
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      AAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTC 660
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      GTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAG 720
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      ACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTC 780
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      AAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATC 840
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      GTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTG 900
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      TGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCG 960
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      TCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGA 1020
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      GAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCT 1080
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      CAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAA 1140
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      GACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCA 1200
consensus_2202#1      ------------------------------------------------------------
                                                                                  

consensus_2202#0      AGAATGGATGATCTTGGCAATGGTGAGAAG--ATGCATTTGATGATGCATTTGCTTAAGG 1258
consensus_2202#1      ------------TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGG 48
                                   * ************ *   ****** *********************

consensus_2202#0      CCGGTGACCGGTATGGATTGGAG-AGGCTCAGG--ATCATGTGCGAGAG--ATTTCTAGC 1313
consensus_2202#1      CCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGC 108
                      *********************** ******* *  **********      **  *****

consensus_2202#0      -TACG-AACCTCG-ACACGG-AGCATGTATCTGCG-ATACTGGGTCTAGCTGACTTGCTA 1368
consensus_2202#1      CTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTA 168
                       **** ******* ****** ************** ************************

consensus_2202#0      GATCTCAAG---AAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGA--GAA 1423
consensus_2202#1      CATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAA 228
                       ******     ******************* *********************    ***

consensus_2202#0      TGGATGCCGTGGCTGCAAGTCAAGGGTACCA-GCA-GCTGAAGAGAGCATTTCCCTCTCT 1481
consensus_2202#1      TGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCT 288
                      ******************************* *** ************************

consensus_2202#0      GGCGTTTGA-AGTGTGGGAGA---GGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTT 1537
consensus_2202#1      GGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTT 348
                      ********* *********     *  *********************************

consensus_2202#0      CTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTT 1597
consensus_2202#1      CTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTT 408
                      ************************************************************

consensus_2202#0      TTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCA 1657
consensus_2202#1      TTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCA 468
                      ************************************************************

consensus_2202#0      CGCG-TGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTT 1716
consensus_2202#1      CGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTT 528
                      **** *************************************** ***************

consensus_2202#0      AGA-TCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAG 1775
consensus_2202#1      AGAATCGAGTTGTTTTTTACAAAAAAAAAAAA---------------------------- 560
                      *** *************** *    *                                  

consensus_2202#0      AAAT 1779
consensus_2202#1      ----
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)