These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1014 fasta sequence [CTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGCCGTCAAGCAGAAGGGGCTAGCTGCGGCCGGCGAGTTCAGCACCAAGATACCTAATAAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGGCGACGGCGAAGAAGAAAGAGGCGGCAGCGGCGGCGGTGAAGGAGGAGGACGAACCTACCAAGAAACCAAAGCTCAAGAAAGAAGAGGATGACTCCAATTCCGCCATCTCCGCCGCCGGGGGAGCACAAGTCTGGACATGCAAGAAGAACGACGGCAAGAGGTGGCACTGCCAGCGGCGGGTGAGGCAGCCCAACTCCCTCTGCGACTACCACTCCGACCAGAAGCGCGGCTACTACAACCCGCTGTACGACGACCCCACCGACGAGACGTATGCTCCACCGGCGTCACCGCCGTCATCGGTGGTGCCGGCGACCGCGTCCTCCAAGACCTCCACCAGCTCCTCCAAGGCGCGGAAGAAGAAGGTGGCGGATTCCGGCGAGGGGTTCTACTACTACGCAGGGTTCGGCCCGTTCCGCACCA] [+] EMBL AK069924 [CTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGCCGTCAAGCAGAAGGGGCTAGCTGCGGCCGGCGAGTTCAGCACCAAGATACCTAATAAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGGCGACGGCGAAGAAGAAAGAGGCGGCAGCGGCGGCGGTGAAGGAGGAGGACGAACCTACCAAGAAACCAAAGCTCAAGAAAGAAGAGGATGACTCCAATTCCGCCATCTCCGCCGCCGGGGGAGCACAAGTCTGGACATGCAAGAAGAACGACGGCAAGAGGTGGCACTGCCAGCGGCGGGTGAGGCAGCCCAACTCCCTCTGCGACTACCACTCCGACCAGAAGCGCGGCTACTACAACCCGCTGTACGACGACCCCACCGACGAGACGTATGCTCCACCGGCGTCACCGCCGTCATCGGTGGTGCCGGCGACCGCGTCCTCCAAGACCTCCACCAGCTCCTCCAAGGCGCGGAAGAAGAAGGTGGCGGATTCCGGCGAGGGGTTCTACTACTACGCAGGGTTCGGCCCGTTCCGCACCA] consensusID : consensus_2209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence [ACACCCATCTCTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGNCGTCAAGCAGAAGGGGCTAGCTGCNNGCCGGGAGTTCAGCACCAAGATACCTANNTAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGCGACGGCGAAGAGAAAGAGGNGCAACCGCNGCTGTGATGAGGGGACGACCTACCAGATACATGCTCAGAAAGAGAGGTGACTCCATCGCATNNTCGCGCGGGACACAGTCTGACTGCGAGAACACGCAAAGTGCCTGCGCGCGTGAGCAGCATCCTTGACACATTGACGAGCGGTGTATACTTCTGATCACACTAAAAAGATTTCCCGGCCCTTAGGGGGGATGGTACAATCCTTCTAAGGAGAAGGGGGTGATGAGATGTTGACCAGGCA] [+] EMBL AW155047 [ACACCCATCTCTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGNCGTCAAGCAGAAGGGGCTAGCTGCNNGCCGGGAGTTCAGCACCAAGATACCTANNTAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGCGACGGCGAAGAGAAAGAGGNGCAACCGCNGCTGTGATGAGGGGACGACCTACCAGATACATGCTCAGAAAGAGAGGTGACTCCATCGCATNNTCGCGCGGGACACAGTCTGACTGCGAGAACACGCAAAGTGCCTGCGCGCGTGAGCAGCATCCTTGACACATTGACGAGCGGTGTATACTTCTGATCACACTAAAAAGATTTCCCGGCCCTTAGGGGGGATGGTACAATCCTTCTAAGGAGAAGGGGGTGATGAGATGTTGACCAGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2209#0 ----------CTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAA 50 consensus_2209#1 ACACCCATCTCTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAA 60 ************************************************** consensus_2209#0 ATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTC 110 consensus_2209#1 ATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTC 120 ************************************************************ consensus_2209#0 GCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTC 170 consensus_2209#1 GCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTC 180 ************************************************************ consensus_2209#0 CTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGG 230 consensus_2209#1 CTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGG 240 ************************************************************ consensus_2209#0 GCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCG 290 consensus_2209#1 GCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCG 300 ************************************************************ consensus_2209#0 TACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCC 350 consensus_2209#1 TACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCC 360 ************************************************************ consensus_2209#0 GGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCC 410 consensus_2209#1 GGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCC 420 ************************************************************ consensus_2209#0 GATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGC 470 consensus_2209#1 GATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGC 480 ************************************************************ consensus_2209#0 TGGCTCTTCCCGACCAGCATGCCCGCCGCCGTCAAGCAGAAGGGGCTAGCTGCGGCCGGC 530 consensus_2209#1 TGGCTCTTCCCGACCAGCATGCCCGCCGNCGTCAAGCAGAAGGGGCTAGCTGCNNGCCGG 540 **************************** ************************ * * consensus_2209#0 GAGTTCAGCACCAAGATACCTAATAAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCA 590 consensus_2209#1 GAGTTCAGCACCAAGATACCTANNTAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCA 600 ********************** *********************************** consensus_2209#0 CCGGCGACGGCGAAGAAGAAAGAGGCGGCAGCGGCGGCGGTGAAGGAGGAGGACGAACCT 650 consensus_2209#1 CCG-CGACGGCGAAGA-GAAAGAGGNG-CAACCGCNGCTGTGATGAGG--GGACGA-CCT 654 *** ************ ******** * ** * ** ** **** * * ****** *** consensus_2209#0 ACCAAGAAACCAAAGCTCAAGAAAGAAGAGGATGACTCCAATTCCGCCATCTCCGCCGCC 710 consensus_2209#1 ACCA-GATAC--ATGCTCAGAAAGAGA---GGTGACTCCA---TCGC-ATNNTCGCGCGG 704 **** ** ** * ***** ** * * ******** *** ** *** consensus_2209#0 GGGGGAGCACAAGTCTGG--ACATGCAAGAAGAACGACGGCAAGAG--GTGGCACTGCCA 766 consensus_2209#1 GACACAGTCTGACTGCGAGAACACGCAAAGTGCCTGCGCGCGTGAGCAGCATCCTTGACA 764 * ** * * * *** **** * * ** *** * * ** ** consensus_2209#0 G--CGGCGGGTGAGGCAGCC--CAACTCCCTCTGCGACTACCACTCCGACCAGAAGCGCG 822 consensus_2209#1 CATTGACGAGCGGTGTATACTTCTGATCACACTAAAAAGATT-TCCCGGCCCTTAGGGGG 823 * ** * * * * * * ** * ** * * *** ** ** * * consensus_2209#0 GCTACTACAACCCGCTGTACGACGACCCCACCGACGAGACGTATGCTCCACCGGCGTCAC 882 consensus_2209#1 GATGGTACAATCC-TTCTAAGGAGAAGGGGGTGATGAGATGT-TGACCAGGCA------- 874 * * ***** ** * ** * ** ** **** ** ** * * consensus_2209#0 CGCCGTCATCGGTGGTGCCGGCGACCGCGTCCTCCAAGACCTCCACCAGCTCCTCCAAGG 942 consensus_2209#1 ------------------------------------------------------------ consensus_2209#0 CGCGGAAGAAGAAGGTGGCGGATTCCGGCGAGGGGTTCTACTACTACGCAGGGTTCGGCC 1002 consensus_2209#1 ------------------------------------------------------------ consensus_2209#0 CGTTCCGCACCA 1014 consensus_2209#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||