cluster # 2212

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Oryza sativa
cluster # 2212 cluster # 2212 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2212#0 length = 548 sequences # 1

consensus_2212#1 length = 200 sequences # 1

consensusID : consensus_2212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [CAACGGCTTCGATAAGGNTAACACCTTCGTGGCCTCGCCGGCAAGAGGATGTACTCCTCCACNTNTCCATCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAGCACCCCTTCTTCGACTATTTNCCACAAGAAACCCCAAGGACCTGAACCCAAGCCGGACCCCAAGCCGACGCCATTGCCGGCGAACGGTGGTGGTGGCGGTGCAGGAAACGGTGATGGCGGCNCCGAGGGGAACANTGGCGGAGTGCGCCGTCTCCCAGCTCTCCGCCTGTCTACCACTGAAAAATTCATCCATTCCATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCGGTTCTTGCGTGATTAATTAATTTCCAGGTCAGCTTGTTCGTGCAGAATTAATAAAAGTTGTGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTGTTGGAGACTTCNGTGCACAAGCGTGTTGGTTTTCAGGNGAAATAATACGTGTTCCAGNGCGNTNTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU030269             [CAACGGCTTCGATAAGGNTAACACCTTCGTGGCCTCGCCGGCAAGAGGATGTACTCCTCCACNTNTCCATCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAGCACCCCTTCTTCGACTATTTNCCACAAGAAACCCCAAGGACCTGAACCCAAGCCGGACCCCAAGCCGACGCCATTGCCGGCGAACGGTGGTGGTGGCGGTGCAGGAAACGGTGATGGCGGCNCCGAGGGGAACANTGGCGGAGTGCGCCGTCTCCCAGCTCTCCGCCTGTCTACCACTGAAAAATTCATCCATTCCATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCGGTTCTTGCGTGATTAATTAATTTCCAGGTCAGCTTGTTCGTGCAGAATTAATAAAAGTTGTGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTGTTGGAGACTTCNGTGCACAAGCGTGTTGGTTTTCAGGNGAAATAATACGTGTTCCAGNGCGNTNTAAAAAAAAAAAAAAAAAAAA]




>consensus_2212#0
CAACGGCTTCGATAAGGNTAACACCTTCGTGGCCTCGCCGGCAAGAGGATGTACTCCTCC
ACNTNTCCATCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAGCACCCCTTC
TTCGACTATTTNCCACAAGAAACCCCAAGGACCTGAACCCAAGCCGGACCCCAAGCCGAC
GCCATTGCCGGCGAACGGTGGTGGTGGCGGTGCAGGAAACGGTGATGGCGGCNCCGAGGG
GAACANTGGCGGAGTGCGCCGTCTCCCAGCTCTCCGCCTGTCTACCACTGAAAAATTCAT
CCATTCCATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCG
GTTCTTGCGTGATTAATTAATTTCCAGGTCAGCTTGTTCGTGCAGAATTAATAAAAGTTG
TGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTGTTGGAGACTTCNGTGCA
CAAGCGTGTTGGTTTTCAGGNGAAATAATACGTGTTCCAGNGCGNTNTAAAAAAAAAAAA
AAAAAAAA

consensusID : consensus_2212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [ATGTGTTGGAGACTTCAGTGCACAAGCGTGTTGGTTTTCAGGAGANATAATACGTGTTCCAGAGCGCTCTATATATGTNTGTCGTGTCTCTATTTATTTGCATATATATGTNATTCGGTAATGTAATTTATATATTTATAAGATATGGAAAATTGTTCCTATTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU094658             [ATGTGTTGGAGACTTCAGTGCACAAGCGTGTTGGTTTTCAGGAGANATAATACGTGTTCCAGAGCGCTCTATATATGTNTGTCGTGTCTCTATTTATTTGCATATATATGTNATTCGGTAATGTAATTTATATATTTATAAGATATGGAAAATTGTTCCTATTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_2212#1
ATGTGTTGGAGACTTCAGTGCACAAGCGTGTTGGTTTTCAGGAGANATAATACGTGTTCC
AGAGCGCTCTATATATGTNTGTCGTGTCTCTATTTATTTGCATATATATGTNATTCGGTA
ATGTAATTTATATATTTATAAGATATGGAAAATTGTTCCTATTGCCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2212#0      CAACGGCTTCGATAAGGNTAACACCTTCGTGGCCTCGCCGGCAAGAGGATGTACTCCTCC 60
consensus_2212#1      ------------------------------------------------------------
                                                                                  

consensus_2212#0      ACNTNTCCATCGGAGTGCACGTCGGCGTTCCTGTACGACTACTTCCACAAGCACCCCTTC 120
consensus_2212#1      ------------------------------------------------------------
                                                                                  

consensus_2212#0      TTCGACTATTTNCCACAAGAAACCCCAAGGACCTGAACCCAAGCCGGACCCCAAGCCGAC 180
consensus_2212#1      ------------------------------------------------------------
                                                                                  

consensus_2212#0      GCCATTGCCGGCGAACGGTGGTGGTGGCGGTGCAGGAAACGGTGATGGCGGCNCCGAGGG 240
consensus_2212#1      ------------------------------------------------------------
                                                                                  

consensus_2212#0      GAACANTGGCGGAGTGCGCCGTCTCCCAGCTCTCCGCCTGTCTACCACTGAAAAATTCAT 300
consensus_2212#1      ------------------------------------------------------------
                                                                                  

consensus_2212#0      CCATTCCATCAACCCACACATGGTCTGTTTGATTGCATGCATGGTTAATTTTATCGTTCG 360
consensus_2212#1      ------------------------------------ATGTGTTGGAGACTTCAGTGCACA 24
                                                          ***  * *   * ** *  *  * 

consensus_2212#0      GTTCTTGCGTGATTAATTAATTTCCAGGTCAGCTTGTTCGTGCAGAATTAATAAAAGTTG 420
consensus_2212#1      A-----GCGTG-----TTGGTTTTCAGGAGANATAATACGTGT----TCCAGAGCGCTCT 70
                            *****     **  *** ****  *  *  * ****     *  * *    *  

consensus_2212#0      TGATGTGAGGAGTGTGAGTGTGTGAGAACGATCGATTTATGTG-TTGGAGACTTCNGTGC 479
consensus_2212#1      ATATATGTNTGTCGTGTCTCTATTTATTTGCAT-ATATATGTNATTCGGTAATGTAATTT 129
                        ** **      ***  * * *      *    ** *****  ** *  * *    *  

consensus_2212#0      ACAAGCGTGTTGGTTTTCAGGNGAAATAATACGTGTT-CCAGNGCGNTNTAAAAAAAAAA 538
consensus_2212#1      ATATATTTATAAGATAT---GGAAAATTGTTCCTATTGCCAAAAAAAAAAAAAAAAAAAA 186
                      * *    * *  * * *   *  ****  * * * ** ***         **********

consensus_2212#0      AAAAAAAAAA---- 548
consensus_2212#1      AAAAAAAAAAAAAA 200
                      **********