These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 916 fasta sequence [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCAACGACATCTAATTTTTCTTCTCCTTGCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTNTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATNTCTAAAGTTCTTCTCTTCATCTGCTCTATGCTTAACCGACCCAACCCGACGCCCCGTCGTTCCGAGATTGCCACGTCTACAAGACGGCGCGGGCCAGTACGAGAGCACGGCCCGGAGTTAACTCGTAAGTCGCGTCTAGGTATCGTTTAAGGGTGACGAGTGAGAGGAAACACCNGGCTCAATACCATTGTGCGTTGGCGAGATGATAACCAGGAAAGAATCCTACCTTTGGCCAACTATTCTATCCTTTGAAGCGCAAAGTTGTTATCCTCCCTACAGGTCTTACCATATCCTCCAATTGGTTTTATTGGACCCACTAGATGCCTGGAGTACATAGGCGATTTATGCGGGTTATGACTGCCCGCCTTTCCGCCTCTTATGTAAAAAAATACACAAAGGGGCGTATAATCTGGTCCCGCGCGGGCGTGTTGGTTTGTGGTTTTATAAATATAAAAAAAATATAAAAAAAAAAAAANATAAGGGGTGGGTGTATAGTGCCTAAAATAGA] [+] EMBL AW155565 [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCAACGACATCTAATTTTTCTTCTCCTTGCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTNTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATNTCTAAAGTTCTTCTCTTCATCTGCTCTATGCTTAACCGACCCAACCCGACGCCCCGTCGTTCCGAGATTGCCACGTCTACAAGACGGCGCGGGCCAGTACGAGAGCACGGCCCGGAGTTAACTCGTAAGTCGCGTCTAGGTATCGTTTAAGGGTGACGAGTGAGAGGAAACACCNGGCTCAATACCATTGTGCGTTGGCGAGATGATAACCAGGAAAGAATCCTACCTTTGGCCAACTATTCTATCCTTTGAAGCGCAAAGTTGTTATCCTCCCTACAGGTCTTACCATATCCTCCAATTGGTTTTATTGGACCCACTAGATGCCTGGAGTACATAGGCGATTTATGCGGGTTATGACTGCCCGCCTTTCCGCCTCTTATGTAAAAAAATACACAAAGGGGCGTATAATCTGGTCCCGCGCGGGCGTGTTGGTTTGTGGTTTTATAAATATAAAAAAAATATAAAAAAAAAAAAANATAAGGGGTGGGTGTATAGTGCCTAAAATAGA] consensusID : consensus_2227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCGACGACATCTAATTGTTCTTCTCCTTCCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTTTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATTTCTAAAGTTCTTCTCTNCATCTGGTCTATGCTTACCGAACCCAAACCCGAAGAACCGGTTGGTCCGAAAATGCCAACGTATACAGACGGCNCGGGCCAGTACCAGAGCACGGCACGGGAGTGGACTCTAAGTACGCGATCTAGGTATCGTTCAAAGGGTGACGGAGGTGAAGAGGGAAACACANGGGCTCNATATCAATTGGTGCGGTGGCGGAGATGATTGACCCAGGGAGAGAATGCTTACCGCTCTGGACAACCATTTTCCATCCTTTTCCGGATGCAAAAA] [+] EMBL AW155383 [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCGACGACATCTAATTGTTCTTCTCCTTCCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTTTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATTTCTAAAGTTCTTCTCTNCATCTGGTCTATGCTTACCGAACCCAAACCCGAAGAACCGGTTGGTCCGAAAATGCCAACGTATACAGACGGCNCGGGCCAGTACCAGAGCACGGCACGGGAGTGGACTCTAAGTACGCGATCTAGGTATCGTTCAAAGGGTGACGGAGGTGAAGAGGGAAACACANGGGCTCNATATCAATTGGTGCGGTGGCGGAGATGATTGACCCAGGGAGAGAATGCTTACCGCTCTGGACAACCATTTTCCATCCTTTTCCGGATGCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2227#0 CAAATCTGCACCAACGACGAGACTTCAATAACGATACCAACGACATCTAATTTTTCTTCT 60 consensus_2227#1 CAAATCTGCACCAACGACGAGACTTCAATAACGATACCGACGACATCTAATTGTTCTTCT 60 ************************************** ************* ******* consensus_2227#0 CCTTGCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTG 120 consensus_2227#1 CCTTCCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTG 120 **** ******************************************************* consensus_2227#0 AAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCC 180 consensus_2227#1 AAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCC 180 ************************************************************ consensus_2227#0 GGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCT 240 consensus_2227#1 GGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCT 240 ************************************************************ consensus_2227#0 CCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAG 300 consensus_2227#1 CCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAG 300 ************************************************************ consensus_2227#0 CCCCCGAAGGTCAACTNTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGC 360 consensus_2227#1 CCCCCGAAGGTCAACTTTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGC 360 **************** ******************************************* consensus_2227#0 ATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATNTCTAAAGTTCTT 420 consensus_2227#1 ATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATTTCTAAAGTTCTT 420 *********************************************** ************ consensus_2227#0 CTCTTCATCTGCTCTATGCTTAACCGACCCAA-CCCGACGCCCCG-TCGTTCCGAGATTG 478 consensus_2227#1 CTCTNCATCTGGTCTATGCTTACCGAACCCAAACCCGAAGAACCGGTTGGTCCGAAAATG 480 **** ****** ********** * ****** ***** * *** * * ***** * ** consensus_2227#0 CCA-CGTCTACAAGACGGCGCGGGCCAGTACGAGAGCACGGCCCGGAGTTAACTCGTAAG 537 consensus_2227#1 CCAACGTATACA-GACGGCNCGGGCCAGTACCAGAGCACGGCACGGGAGTGGACTCTAAG 539 *** *** **** ****** *********** ********** *** * **** consensus_2227#0 T-CGCG-TCTAGGTATCGTTTAA-GGGTGACGAGTGAGA----GGAAACAC-CNGGCTCA 589 consensus_2227#1 TACGCGATCTAGGTATCGTTCAAAGGGTGACGGAGGTGAAGAGGGAAACACANGGGCTCN 599 * **** ************* ** ******** * ** ******** ***** consensus_2227#0 ATACCATT--GTGCGTTGGCG-AGATGAT--AACCAGGAA-AGAAT-CCTACC--TTTGG 640 consensus_2227#1 ATATCAATTGGTGCGGTGGCGGAGATGATTGACCCAGGGAGAGAATGCTTACCGCTCTGG 659 *** ** * ***** ***** ******* * ***** * ***** * **** * *** consensus_2227#0 CCAACTATTCT--ATCCTTTG--AAGCGCAAAGTTGTTATCCTCCCTACAGGTCTTACCA 696 consensus_2227#1 ACAACCATTTTCCATCCTTTTCCGGATGCAAAAA-------------------------- 693 **** *** * ******* ***** consensus_2227#0 TATCCTCCAATTGGTTTTATTGGACCCACTAGATGCCTGGAGTACATAGGCGATTTATGC 756 consensus_2227#1 ------------------------------------------------------------ consensus_2227#0 GGGTTATGACTGCCCGCCTTTCCGCCTCTTATGTAAAAAAATACACAAAGGGGCGTATAA 816 consensus_2227#1 ------------------------------------------------------------ consensus_2227#0 TCTGGTCCCGCGCGGGCGTGTTGGTTTGTGGTTTTATAAATATAAAAAAAATATAAAAAA 876 consensus_2227#1 ------------------------------------------------------------ consensus_2227#0 AAAAAAANATAAGGGGTGGGTGTATAGTGCCTAAAATAGA 916 consensus_2227#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||