cluster # 2230

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Oryza sativa
cluster # 2230 cluster # 2230 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2230#0 length = 756 sequences # 1

consensus_2230#1 length = 626 sequences # 1

consensusID : consensus_2230#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 756
fasta sequence

                              [CTAGTCTCGAGTTTTTTTTTTTTTTTTTTCTCACTGCCATCCATACATTTCTCTTTGCTACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTGATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACAGGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCGGCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCGCGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCGGTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGCCTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGGGTCGTCGAAGCCGCGGATTCNGGGATCTCGATCACCAGCGTGCTGCGGCCTCTCGCTTGCATGGTCACCGCGCCGGCGCCATGGGCGGACAAGCCCANCAAGACCCTCGCCGGGAGGCTTACGGTGATCTTTCCCGGGGTTCCGGCGGAACGGAAGAAAATGTGTTATGACAATTACTGGAAGCCGGCTACGGCCTGTTGTGGTAACCTTCATAATATACTCACATCGTGGGATCCGTGTCCACACGTGTAGGCATGTCTTATTGTGATATTATCATT]

[+] EMBL AW155434             [CTAGTCTCGAGTTTTTTTTTTTTTTTTTTCTCACTGCCATCCATACATTTCTCTTTGCTACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTGATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACAGGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCGGCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCGCGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCGGTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGCCTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGGGTCGTCGAAGCCGCGGATTCNGGGATCTCGATCACCAGCGTGCTGCGGCCTCTCGCTTGCATGGTCACCGCGCCGGCGCCATGGGCGGACAAGCCCANCAAGACCCTCGCCGGGAGGCTTACGGTGATCTTTCCCGGGGTTCCGGCGGAACGGAAGAAAATGTGTTATGACAATTACTGGAAGCCGGCTACGGCCTGTTGTGGTAACCTTCATAATATACTCACATCGTGGGATCCGTGTCCACACGTGTAGGCATGTCTTATTGTGATATTATCATT]




>consensus_2230#0
CTAGTCTCGAGTTTTTTTTTTTTTTTTTTCTCACTGCCATCCATACATTTCTCTTTGCTA
CTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTGAT
ATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACAGG
GAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCGGC
GGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCGCG
GATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCGGT
GGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGCCT
TCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGGGT
CGTCGAAGCCGCGGATTCNGGGATCTCGATCACCAGCGTGCTGCGGCCTCTCGCTTGCAT
GGTCACCGCGCCGGCGCCATGGGCGGACAAGCCCANCAAGACCCTCGCCGGGAGGCTTAC
GGTGATCTTTCCCGGGGTTCCGGCGGAACGGAAGAAAATGTGTTATGACAATTACTGGAA
GCCGGCTACGGCCTGTTGTGGTAACCTTCATAATATACTCACATCGTGGGATCCGTGTCC
ACACGTGTAGGCATGTCTTATTGTGATATTATCATT

consensusID : consensus_2230#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [TTTTTTTTGGAACATACGGAGAGGGATGCTTCTCACTGCCATCCATACATTTCTCTTTGCTACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTGATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACAGGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCGGCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCGCGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCGGTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGCCTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGGGTCGTCGAAGCCGCGGATTCGGGGATCTCGATCACCAGCGTGCTGCGGCCCTCCGCTGTCATGGTCACCGCGCCGGCGCCATGGTCGGACAGGCCGAGCAGGACGCTCGCCGGGAGGCTCACGGTGTAGCTCGCCGGCGGCTCCGG]

[-] EMBL AB045120             [TTTTTTTTGGAACATACGGAGAGGGATGCTTCTCACTGCCATCCATACATTTCTCTTTGCTACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTGATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACAGGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCGGCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCGCGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCGGTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGCCTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGGGTCGTCGAAGCCGCGGATTCGGGGATCTCGATCACCAGCGTGCTGCGGCCCTCCGCTGTCATGGTCACCGCGCCGGCGCCATGGTCGGACAGGCCGAGCAGGACGCTCGCCGGGAGGCTCACGGTGTAGCTCGCCGGCGGCTCCGG]




>consensus_2230#1
TTTTTTTTGGAACATACGGAGAGGGATGCTTCTCACTGCCATCCATACATTTCTCTTTGC
TACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTG
ATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACA
GGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCG
GCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCG
CGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCG
GTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGC
CTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGG
GTCGTCGAAGCCGCGGATTCGGGGATCTCGATCACCAGCGTGCTGCGGCCCTCCGCTGTC
ATGGTCACCGCGCCGGCGCCATGGTCGGACAGGCCGAGCAGGACGCTCGCCGGGAGGCTC
ACGGTGTAGCTCGCCGGCGGCTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2230#0      -CTAGTCTCGAGTTTTTTTTTTTTTTT-TTTCTCACTGCCATCCATACATTTCTCTTTGC 58
consensus_2230#1      TTTTTTTTGGAACATACGGAGAGGGATGCTTCTCACTGCCATCCATACATTTCTCTTTGC 60
                        *  * * **   *           *  *******************************

consensus_2230#0      TACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTG 118
consensus_2230#1      TACTTGACTGATGAACAAATAATTTCTACTTAAATGTTTCTAATCTTAAAAATGAAATTG 120
                      ************************************************************

consensus_2230#0      ATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACA 178
consensus_2230#1      ATATTTTCTAAAATCGTAGGAATTAATGGCGATTCCAGTTCGGTTCTACCGATATGTACA 180
                      ************************************************************

consensus_2230#0      GGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCG 238
consensus_2230#1      GGGAGATCGCCTTATAATACTTGACGACCTCGCCGCCGTCAATTCCGGACATGCGCGGCG 240
                      ************************************************************

consensus_2230#0      GCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCG 298
consensus_2230#1      GCGGTTCTTGCACCGGCCTCGGCCTCCGGTGGCCGTGCCGGCGTTGCCGCCTCCACGGCG 300
                      ************************************************************

consensus_2230#0      CGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCG 358
consensus_2230#1      CGGATGGCGACGGTGACGCTGACACCGTGCTCGACGTCGCCGTCGTCGTTGTCTCCTCCG 360
                      ************************************************************

consensus_2230#0      GTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGC 418
consensus_2230#1      GTGGCGCAGGAGCATGACGACGTCGACCCCGCCGCCCCTTGCCGCCCGAAGCTCCAGAGC 420
                      ************************************************************

consensus_2230#0      CTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGG 478
consensus_2230#1      CTTCTCAGTGACCTCAGCCGCGCCAAGCTCGGCGACGACCTCGCCGCCGCGTCGCGCGGG 480
                      ************************************************************

consensus_2230#0      GTCGTCGAAGCCGCGGATTCNGGGATCTCGATCACCAGCGTGCTGCGGCCTCTCGCTTGC 538
consensus_2230#1      GTCGTCGAAGCCGCGGATTCGGGGATCTCGATCACCAGCGTGCTGCGGCCCTCCGCTGTC 540
                      ******************** *****************************   ****  *

consensus_2230#0      ATGGTCACCGCGCCGGCGCCATGGGCGGACAAGCCCANCAAGACCCTCGCCGGGAGGCTT 598
consensus_2230#1      ATGGTCACCGCGCCGGCGCCATGGTCGGACAGGCCGAGCAGGACGCTCGCCGGGAGGCTC 600
                      ************************ ****** *** * ** *** ************** 

consensus_2230#0      ACGGTG-ATCTTTCCCGGGGTTCCGGCGGAACGGAAGAAAATGTGTTATGACAATTACTG 657
consensus_2230#1      ACGGTGTAGCTCGCCGGCGGCTCCGG---------------------------------- 626
                      ****** * **  ** * ** *****                                  

consensus_2230#0      GAAGCCGGCTACGGCCTGTTGTGGTAACCTTCATAATATACTCACATCGTGGGATCCGTG 717
consensus_2230#1      ------------------------------------------------------------
                                                                                  

consensus_2230#0      TCCACACGTGTAGGCATGTCTTATTGTGATATTATCATT 756
consensus_2230#1      ---------------------------------------