cluster # 2255

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Oryza sativa
cluster # 2255 cluster # 2255 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2255#0 length = 693 sequences # 1

consensus_2255#1 length = 588 sequences # 1

consensusID : consensus_2255#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [AGGAGGAGGAAGAAGACGACGACGACGACCTGGTCCTAGTCGCCTCCACGACCAGCGAGAGGGACGTCACCGGCGCCGCCGCCGCCGGCAGGTGCAGCCGGAACGACGGCAANCGGTGGCGCTGCAAGAGCGCGGCCGTGCCGGGGTACGTGTTCTGCGACCGGCACATCGCGTGGTCCACACGCAAGCGCAAGCCCAGGAAGAGGAGCCACTCCAGCATCGTGGACCCGCCGCAGCCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAGGAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAGTTCCACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAACGGCGGCGGCGGCGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGATTCTTCGCACCAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAGAGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGGTTGAAAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTTAACCGAGGTAAAAGTGGCAAATAATTTTGGCCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BP184591             [AGGAGGAGGAAGAAGACGACGACGACGACCTGGTCCTAGTCGCCTCCACGACCAGCGAGAGGGACGTCACCGGCGCCGCCGCCGCCGGCAGGTGCAGCCGGAACGACGGCAANCGGTGGCGCTGCAAGAGCGCGGCCGTGCCGGGGTACGTGTTCTGCGACCGGCACATCGCGTGGTCCACACGCAAGCGCAAGCCCAGGAAGAGGAGCCACTCCAGCATCGTGGACCCGCCGCAGCCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAGGAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAGTTCCACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAACGGCGGCGGCGGCGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGATTCTTCGCACCAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAGAGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGGTTGAAAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTTAACCGAGGTAAAAGTGGCAAATAATTTTGGCCAAAAAAAAAAAAAAAAAAAAA]




>consensus_2255#0
AGGAGGAGGAAGAAGACGACGACGACGACCTGGTCCTAGTCGCCTCCACGACCAGCGAGA
GGGACGTCACCGGCGCCGCCGCCGCCGGCAGGTGCAGCCGGAACGACGGCAANCGGTGGC
GCTGCAAGAGCGCGGCCGTGCCGGGGTACGTGTTCTGCGACCGGCACATCGCGTGGTCCA
CACGCAAGCGCAAGCCCAGGAAGAGGAGCCACTCCAGCATCGTGGACCCGCCGCAGCCAA
AGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAGGAGG
AGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAGTTCC
ACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAACGGCGGCGGCGGCG
GGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGATTCTTCGCACCAGC
GTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAGAGCT
CACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGGTTGA
AAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTTAACCGAGGTAAAAGTGGCAA
ATAATTTTGGCCAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_2255#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [AACCAAGCCCAGAGCCGCGTCGAGATCAGCGAGCGAGTTAGTGAGCTGTGAGCCGCCAGATCGGGCCATGAGGATCCGCAAGCGCACGCCGGTCAGGGCCGCCTCGCCGTCGCCGGGACCGTCGCCGCAGCCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAGGAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAGTTCCACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAGCGGCGGCGGCGGTGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGATTCTTCGCACCAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAGAGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGGTTGAAAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTGAACCGAGGTAAAATGGCAAATAATTTTGGCCATATGCCCTGTTCCTTCCCGGGG]

[+] EMBL AK109236             [AACCAAGCCCAGAGCCGCGTCGAGATCAGCGAGCGAGTTAGTGAGCTGTGAGCCGCCAGATCGGGCCATGAGGATCCGCAAGCGCACGCCGGTCAGGGCCGCCTCGCCGTCGCCGGGACCGTCGCCGCAGCCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAGGAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAGTTCCACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAGCGGCGGCGGCGGTGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGATTCTTCGCACCAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAGAGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGGTTGAAAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTGAACCGAGGTAAAATGGCAAATAATTTTGGCCATATGCCCTGTTCCTTCCCGGGG]




>consensus_2255#1
AACCAAGCCCAGAGCCGCGTCGAGATCAGCGAGCGAGTTAGTGAGCTGTGAGCCGCCAGA
TCGGGCCATGAGGATCCGCAAGCGCACGCCGGTCAGGGCCGCCTCGCCGTCGCCGGGACC
GTCGCCGCAGCCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGT
GGAGGAAGAGGAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGA
CGACGAGGAGTTCCACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAG
CGGCGGCGGCGGTGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGA
TTCTTCGCACCAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTC
AGAGTAGCAGAGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGA
AACATTTTGGTTGAAAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTGAACCGA
GGTAAAATGGCAAATAATTTTGGCCATATGCCCTGTTCCTTCCCGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2255#0      AGGAGGAGGAAGAAGACGACGACGACGACCTGGTCCTAGTCGCCTCCACGACCAGCGAGA 60
consensus_2255#1      ------------------------------------------------------------
                                                                                  

consensus_2255#0      GGGACGTCACCGGCGCCGCCGCCGCCGGCAGGTGCAGCCGGAACGACGGCAANCGGTGGC 120
consensus_2255#1      --------------------------------------------AACCAAGCCCAGAGCC 16
                                                                   **      * * * *

consensus_2255#0      GCTGCAAGAGCGCGGCCGTGCCGGGGTACGTGTTCTGCGA-CCGGCACATCGCGTGGTCC 179
consensus_2255#1      GCGTCGAGATCA-----GCGAGCGAGTTAGTGAGCTGTGAGCCGCCAGATCGGGCCATGA 71
                      **  * *** *      * *   * **  ***  *** ** *** ** **** *   *  

consensus_2255#0      ACA--CGCAAGCGCAAGCCCAGGAAGAGGAGCCACTCCAGCATCGTGGAC-CCGCCGCAG 236
consensus_2255#1      GGATCCGCAAGCGCACGCC-GGTCAGGGCCGCCTCGCCGTCGCCGGGACCGTCGCCGCAG 130
                        *  ********** ***  *  ** *  *** * **  *  ** *  *  ********

consensus_2255#0      CCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAG 296
consensus_2255#1      CCAAAGGAAGATCCCGCCGCCGCGGCAAAGGCAGAGGACGACGACGGCGTGGAGGAAGAG 190
                      ************************************************************

consensus_2255#0      GAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAG 356
consensus_2255#1      GAGGAGTCCAAGAACCACGGCGCTAACCTCCGGTGCAACGACGACGACGACGACGAGGAG 250
                      ************************************************************

consensus_2255#0      TTCCACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAACGGCGGCGGC 416
consensus_2255#1      TTCCACTACTACGGCGGGTTACAGCACGGCGGCAGGAAGCGGGCGAAGAGCGGCGGCGGC 310
                      ************************************************* **********

consensus_2255#0      GGCGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGATTCTTCGCAC 476
consensus_2255#1      GGTGGGCCGGCGTGAAAGCTCTGCTTCCCCGCCGGCGGCTACGTCATTGATTCTTCGCAC 370
                      ** *********************************************************

consensus_2255#0      CAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAG 536
consensus_2255#1      CAGCGTTTGCATTGCGTTGCGTCGATCGATCGATCACACACTACGGTTTCAGAGTAGCAG 430
                      ************************************************************

consensus_2255#0      AGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGG 596
consensus_2255#1      AGCTCACTGTAGCTAACCCCAGACAAATTCAGAGGCAAAAAATGCCATGAAACATTTTGG 490
                      ************************************************************

consensus_2255#0      TTGAAAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTTAACCGAGGTAAAAGTG 656
consensus_2255#1      TTGAAAAATCTTGGACCAGATGCACAAGTAGGAAAGATGGATTGAACCGAGGTAAAA-TG 549
                      ******************************************* ************* **

consensus_2255#0      GCAAATAATTTTGGCCAAAAAAAAAAAAAAAAAAAAA-- 693
consensus_2255#1      GCAAATAATTTTGGCCATATGCCCTGTTCCTTCCCGGGG 588
                      ***************** *