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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1022 fasta sequence
[AGCAGTACATCACTCACTCACTCACTTCACAGTTTACACCACCGGCCGGAAGCCATGGCGCCGGCTAGGGCGCACCACCTCCTAGCCTGCCTGTTGGCTTCTGCGCTGCTCGCCGCCGCCACGCCGGTGACCGGCGGTGGGCTCATGACGGACCAGCTCGAGGTACTGTTTGGCCAGACGCAGCTGCTCAACGACAGCAATGGCGACCAGACAATTGCGCTGACGCTAGACCGCGAGATGGGGTCGGCGTTCAAGTCCAAGACCTCGTACCTCTTTGCAAGGATCGACATGGACATCAAGCTCGTCGCCGACGACTCCGCCGGCACCGTCACCACGATATACTTGATATCCGAGAAGGATTGGAACACCCACGACGAGATCGACCTGGAGTTCCTGGGCAACGTCACCGGGCAACCGTACACCCTGCATACCAACATCTTTGCCAACGGCGAAGGCGGCAGGGAGGTGCAGTACCGGCTCTGGTTTGATCCTACCCAGGATTTCCACACCTACTCCGTCATCTGGAACCCAGACGAGATCCTGATCCTGGTTGACAACATGCCGATCCGGCAATTCAAGAACCACTTGGACTCCGGCGTGCCGTTCCCGATCTACCAGCCGATGAGGCTGTTTGGCTGCCTGTGGGACGCCGACGACTGGGCGACGGAGGGTGGCCGCATCAAGACCGACTGGTCGCAGGCGCCTTTCGTGGCATACTTCCGGAACTACACCGCCGACGGCTGCGTGCCGAGCTCTTATGCGTGGGTATGCGGCCAGGGCCCGGCCAGCAGCAGTGACTGGTTCGACCGGGGGCTGGACGACGTCAAGCAGCAGCAGCAGCTGAGGGAGGCCCAGGACAAGTACATGATCTACAACTACTGCAACGACCCCGAGAGGTTCCCCGATGGTTATCCAAAAGAGTGTGGGTTGCAGTAGGATAGAGGTGGCTCGGTATGCATGTGAGAAGTGCGTGAAATGTACCGAATCAATATTCCTTTTTTGAAGATTTTACTGGAATATTG]
[+] EMBL AK063614 [AGCAGTACATCACTCACTCACTCACTTCACAGTTTACACCACCGGCCGGAAGCCATGGCGCCGGCTAGGGCGCACCACCTCCTAGCCTGCCTGTTGGCTTCTGCGCTGCTCGCCGCCGCCACGCCGGTGACCGGCGGTGGGCTCATGACGGACCAGCTCGAGGTACTGTTTGGCCAGACGCAGCTGCTCAACGACAGCAATGGCGACCAGACAATTGCGCTGACGCTAGACCGCGAGATGGGGTCGGCGTTCAAGTCCAAGACCTCGTACCTCTTTGCAAGGATCGACATGGACATCAAGCTCGTCGCCGACGACTCCGCCGGCACCGTCACCACGATATACTTGATATCCGAGAAGGATTGGAACACCCACGACGAGATCGACCTGGAGTTCCTGGGCAACGTCACCGGGCAACCGTACACCCTGCATACCAACATCTTTGCCAACGGCGAAGGCGGCAGGGAGGTGCAGTACCGGCTCTGGTTTGATCCTACCCAGGATTTCCACACCTACTCCGTCATCTGGAACCCAGACGAGATCCTGATCCTGGTTGACAACATGCCGATCCGGCAATTCAAGAACCACTTGGACTCCGGCGTGCCGTTCCCGATCTACCAGCCGATGAGGCTGTTTGGCTGCCTGTGGGACGCCGACGACTGGGCGACGGAGGGTGGCCGCATCAAGACCGACTGGTCGCAGGCGCCTTTCGTGGCATACTTCCGGAACTACACCGCCGACGGCTGCGTGCCGAGCTCTTATGCGTGGGTATGCGGCCAGGGCCCGGCCAGCAGCAGTGACTGGTTCGACCGGGGGCTGGACGACGTCAAGCAGCAGCAGCAGCTGAGGGAGGCCCAGGACAAGTACATGATCTACAACTACTGCAACGACCCCGAGAGGTTCCCCGATGGTTATCCAAAAGAGTGTGGGTTGCAGTAGGATAGAGGTGGCTCGGTATGCATGTGAGAAGTGCGTGAAATGTACCGAATCAATATTCCTTTTTTGAAGATTTTACTGGAATATTG]
consensusID : consensus_2270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 853 fasta sequence
[GAACACTTAATCAGGTCAACTTCTTGCTTGTTTTCCCAGCTCTGCTCACCTTTAGCTACATACTCTTCCATCATTTTCTATGCCTAGGTCTTCACTAGCCAGCCCATAATCCAAACTTCTTTACATCTTCCAAGAAACCAAATATCTAATGCATCCATCGCCGAGTTCGATGAGATCGATCTGAAAGTCTTTTGACCCTGGTGCTATTGTTCTGCATATAGCCTGCACTTGACCATGGCCTCACTGCCCCTCACACACAGCAGTACATCACTCACTCACTCACTTCACAGTTTACACCACCGGCCGGAAGCCATGGCGCCGGCTAGGGCGCACCACCTCCTAGCCTGCCTGTTGGCTTCTGCGCTGCTCGCCGCCGCCACGCCGGTGACCGGCGGTGGGCTCATGACGGACCAGCTCGAGGTACTGTTTGGCCAGACGCAGCTGCTCAACGACAGCAATGGCGACCAGACAATTGCGCTGACGCTAGACCGCGAGATGGGGTCGGCGTTCAAGTCCAAGACCTCGTACCTCTTTGCAAGGATCGACATGGACATCAAGCTCGTCGCCGACGACTCCGCCGGCACCGTCACCACGATATACGTAAGTGACCATGAAACAGCAGCTGCACCTGGAGTTCCTGGGCAACGTCACCGGGCAACCGTACACCCTGCATACCAACATCTTTGCCAACGGCGAAGGCGGCAGGGAGGTGCAGTACCGGCTCTGGTTTGATCCTACCCAGGATTTCCACACCTACTCCGTCATCTGGAACCCAGACGAGATCCTGTAAGCTTCAACCGGTTGGCTGCCGAGTGCCGAGGCAGTCCTGGTTGCAGGAGTTCGGCGGCGGGGC]
[-] EMBL AK099651 [GAACACTTAATCAGGTCAACTTCTTGCTTGTTTTCCCAGCTCTGCTCACCTTTAGCTACATACTCTTCCATCATTTTCTATGCCTAGGTCTTCACTAGCCAGCCCATAATCCAAACTTCTTTACATCTTCCAAGAAACCAAATATCTAATGCATCCATCGCCGAGTTCGATGAGATCGATCTGAAAGTCTTTTGACCCTGGTGCTATTGTTCTGCATATAGCCTGCACTTGACCATGGCCTCACTGCCCCTCACACACAGCAGTACATCACTCACTCACTCACTTCACAGTTTACACCACCGGCCGGAAGCCATGGCGCCGGCTAGGGCGCACCACCTCCTAGCCTGCCTGTTGGCTTCTGCGCTGCTCGCCGCCGCCACGCCGGTGACCGGCGGTGGGCTCATGACGGACCAGCTCGAGGTACTGTTTGGCCAGACGCAGCTGCTCAACGACAGCAATGGCGACCAGACAATTGCGCTGACGCTAGACCGCGAGATGGGGTCGGCGTTCAAGTCCAAGACCTCGTACCTCTTTGCAAGGATCGACATGGACATCAAGCTCGTCGCCGACGACTCCGCCGGCACCGTCACCACGATATACGTAAGTGACCATGAAACAGCAGCTGCACCTGGAGTTCCTGGGCAACGTCACCGGGCAACCGTACACCCTGCATACCAACATCTTTGCCAACGGCGAAGGCGGCAGGGAGGTGCAGTACCGGCTCTGGTTTGATCCTACCCAGGATTTCCACACCTACTCCGTCATCTGGAACCCAGACGAGATCCTGTAAGCTTCAACCGGTTGGCTGCCGAGTGCCGAGGCAGTCCTGGTTGCAGGAGTTCGGCGGCGGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2270#0 ------------------------------------------------------------
consensus_2270#1 GAACACTTAATCAGGTCAACTTCTTGCTTGTTTTCCCAGCTCTGCTCACCTTTAGCTACA 60
consensus_2270#0 ------------------------------------------------------------
consensus_2270#1 TACTCTTCCATCATTTTCTATGCCTAGGTCTTCACTAGCCAGCCCATAATCCAAACTTCT 120
consensus_2270#0 ------------------------------------------------------------
consensus_2270#1 TTACATCTTCCAAGAAACCAAATATCTAATGCATCCATCGCCGAGTTCGATGAGATCGAT 180
consensus_2270#0 ------------------------------------------------------------
consensus_2270#1 CTGAAAGTCTTTTGACCCTGGTGCTATTGTTCTGCATATAGCCTGCACTTGACCATGGCC 240
consensus_2270#0 ------------------AGCAGTACATCACTCACTCACTCACTTCACAGTTTACACCAC 42
consensus_2270#1 TCACTGCCCCTCACACACAGCAGTACATCACTCACTCACTCACTTCACAGTTTACACCAC 300
******************************************
consensus_2270#0 CGGCCGGAAGCCATGGCGCCGGCTAGGGCGCACCACCTCCTAGCCTGCCTGTTGGCTTCT 102
consensus_2270#1 CGGCCGGAAGCCATGGCGCCGGCTAGGGCGCACCACCTCCTAGCCTGCCTGTTGGCTTCT 360
************************************************************
consensus_2270#0 GCGCTGCTCGCCGCCGCCACGCCGGTGACCGGCGGTGGGCTCATGACGGACCAGCTCGAG 162
consensus_2270#1 GCGCTGCTCGCCGCCGCCACGCCGGTGACCGGCGGTGGGCTCATGACGGACCAGCTCGAG 420
************************************************************
consensus_2270#0 GTACTGTTTGGCCAGACGCAGCTGCTCAACGACAGCAATGGCGACCAGACAATTGCGCTG 222
consensus_2270#1 GTACTGTTTGGCCAGACGCAGCTGCTCAACGACAGCAATGGCGACCAGACAATTGCGCTG 480
************************************************************
consensus_2270#0 ACGCTAGACCGCGAGATGGGGTCGGCGTTCAAGTCCAAGACCTCGTACCTCTTTGCAAGG 282
consensus_2270#1 ACGCTAGACCGCGAGATGGGGTCGGCGTTCAAGTCCAAGACCTCGTACCTCTTTGCAAGG 540
************************************************************
consensus_2270#0 ATCGACATGGACATCAAGCTCGTCGCCGACGACTCCGCCGGCACCGTCACCACGATATAC 342
consensus_2270#1 ATCGACATGGACATCAAGCTCGTCGCCGACGACTCCGCCGGCACCGTCACCACGATATAC 600
************************************************************
consensus_2270#0 TTGATATCCGAGAAGGATTGGAACACCCACGACGAGATCGACCTGGAGTTCCTGGGCAAC 402
consensus_2270#1 GT-------AAGTGACCATGAAACAGCAGCTGC-------ACCTGGAGTTCCTGGGCAAC 646
* ** ** **** * * * ********************
consensus_2270#0 GTCACCGGGCAACCGTACACCCTGCATACCAACATCTTTGCCAACGGCGAAGGCGGCAGG 462
consensus_2270#1 GTCACCGGGCAACCGTACACCCTGCATACCAACATCTTTGCCAACGGCGAAGGCGGCAGG 706
************************************************************
consensus_2270#0 GAGGTGCAGTACCGGCTCTGGTTTGATCCTACCCAGGATTTCCACACCTACTCCGTCATC 522
consensus_2270#1 GAGGTGCAGTACCGGCTCTGGTTTGATCCTACCCAGGATTTCCACACCTACTCCGTCATC 766
************************************************************
consensus_2270#0 TGGAACCCAGACGAGATCCTGATCCTGGTTGACAACATGCCGATCCGGCAATTCAAGAAC 582
consensus_2270#1 TGGAACCCAGACGAGATCCTG----TAAGCTTCAACCGGTTGG-CTGCCGAGTGCCGAGG 821
********************* * **** * * * * * * * **
consensus_2270#0 CA--CTTGGACTCCGGCGTGCCGTTCCCGATCTACCAGCCGATGAGGCTGTTTGGCTGCC 640
consensus_2270#1 CAGTCCTGGTTGCAGGAGTTCGGCGGCGGGGC---------------------------- 853
** * *** * ** ** * * * * *
consensus_2270#0 TGTGGGACGCCGACGACTGGGCGACGGAGGGTGGCCGCATCAAGACCGACTGGTCGCAGG 700
consensus_2270#1 ------------------------------------------------------------
consensus_2270#0 CGCCTTTCGTGGCATACTTCCGGAACTACACCGCCGACGGCTGCGTGCCGAGCTCTTATG 760
consensus_2270#1 ------------------------------------------------------------
consensus_2270#0 CGTGGGTATGCGGCCAGGGCCCGGCCAGCAGCAGTGACTGGTTCGACCGGGGGCTGGACG 820
consensus_2270#1 ------------------------------------------------------------
consensus_2270#0 ACGTCAAGCAGCAGCAGCAGCTGAGGGAGGCCCAGGACAAGTACATGATCTACAACTACT 880
consensus_2270#1 ------------------------------------------------------------
consensus_2270#0 GCAACGACCCCGAGAGGTTCCCCGATGGTTATCCAAAAGAGTGTGGGTTGCAGTAGGATA 940
consensus_2270#1 ------------------------------------------------------------
consensus_2270#0 GAGGTGGCTCGGTATGCATGTGAGAAGTGCGTGAAATGTACCGAATCAATATTCCTTTTT 1000
consensus_2270#1 ------------------------------------------------------------
consensus_2270#0 TGAAGATTTTACTGGAATATTG 1022
consensus_2270#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||