cluster # 2275

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Oryza sativa
cluster # 2275 cluster # 2275 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2275#0 length = 760 sequences # 1

consensus_2275#1 length = 299 sequences # 1

consensusID : consensus_2275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 760
fasta sequence

                              [GCAAGGTGACATGCATGCATTCACCAAGATAAAAGACTTAAATTACAAGGGTGTTACTGATGTTTGATGATCAACACCAAGCTATAGCAAGCATAGGTGCGCTCTGGCAGCTGTCTACAACTTAACCCTTCTTCATTCTTCCAGTGCATAATAATCCATTAATCCACCCAAAGAGATCAATCTCTAGCTAGACAAGAGCCACACACACACACACACACACTACCAGTTATATACTCTGTTGTTGCACCCATCAAACCATGAGCATACACGTGCATAGCATCAAGAGGAACCAGCCTTTTCAGCAGGATGGCTGCTCCTGATGTTATGCAGCTAATTAACCCAAATGCAAGCATGCATGCATGTGATGTAATATGTAAGATATGATCTCTATATTTCCATTGATTCTTCAGCTAGCTTAATTAGCCAGCCGAGCCAGCCATTTCATTGGCCATGGCGCCCACAGAGATCACCGGACCATGCATCGATCTAGCGGCCGAACCCTATGCCGAAAGCCGGCGGCGCCGCCCAGTAGTCCGCCGGGCCGGCGTCGACGCCGACGTCCACCGTGCAGCTCACCGGAACCAGGCACAGGCCCCTGCTCCTCAGATCCATCGTCTTCGCTTCCTCACAGCTTTCATCTTGATCAGGCTGTCCTCTCTTTTTCACGGCATTGTCATGTAGGAGCTGGCCAGGGTCTTCTGGAAATATGCTGTTCCTTTCTCCTTGCACCCTGCTGGCTTCTGGCTGATGCTGGAGCTTG]

[+] EMBL CB644650             [GCAAGGTGACATGCATGCATTCACCAAGATAAAAGACTTAAATTACAAGGGTGTTACTGATGTTTGATGATCAACACCAAGCTATAGCAAGCATAGGTGCGCTCTGGCAGCTGTCTACAACTTAACCCTTCTTCATTCTTCCAGTGCATAATAATCCATTAATCCACCCAAAGAGATCAATCTCTAGCTAGACAAGAGCCACACACACACACACACACACTACCAGTTATATACTCTGTTGTTGCACCCATCAAACCATGAGCATACACGTGCATAGCATCAAGAGGAACCAGCCTTTTCAGCAGGATGGCTGCTCCTGATGTTATGCAGCTAATTAACCCAAATGCAAGCATGCATGCATGTGATGTAATATGTAAGATATGATCTCTATATTTCCATTGATTCTTCAGCTAGCTTAATTAGCCAGCCGAGCCAGCCATTTCATTGGCCATGGCGCCCACAGAGATCACCGGACCATGCATCGATCTAGCGGCCGAACCCTATGCCGAAAGCCGGCGGCGCCGCCCAGTAGTCCGCCGGGCCGGCGTCGACGCCGACGTCCACCGTGCAGCTCACCGGAACCAGGCACAGGCCCCTGCTCCTCAGATCCATCGTCTTCGCTTCCTCACAGCTTTCATCTTGATCAGGCTGTCCTCTCTTTTTCACGGCATTGTCATGTAGGAGCTGGCCAGGGTCTTCTGGAAATATGCTGTTCCTTTCTCCTTGCACCCTGCTGGCTTCTGGCTGATGCTGGAGCTTG]




>consensus_2275#0
GCAAGGTGACATGCATGCATTCACCAAGATAAAAGACTTAAATTACAAGGGTGTTACTGA
TGTTTGATGATCAACACCAAGCTATAGCAAGCATAGGTGCGCTCTGGCAGCTGTCTACAA
CTTAACCCTTCTTCATTCTTCCAGTGCATAATAATCCATTAATCCACCCAAAGAGATCAA
TCTCTAGCTAGACAAGAGCCACACACACACACACACACACTACCAGTTATATACTCTGTT
GTTGCACCCATCAAACCATGAGCATACACGTGCATAGCATCAAGAGGAACCAGCCTTTTC
AGCAGGATGGCTGCTCCTGATGTTATGCAGCTAATTAACCCAAATGCAAGCATGCATGCA
TGTGATGTAATATGTAAGATATGATCTCTATATTTCCATTGATTCTTCAGCTAGCTTAAT
TAGCCAGCCGAGCCAGCCATTTCATTGGCCATGGCGCCCACAGAGATCACCGGACCATGC
ATCGATCTAGCGGCCGAACCCTATGCCGAAAGCCGGCGGCGCCGCCCAGTAGTCCGCCGG
GCCGGCGTCGACGCCGACGTCCACCGTGCAGCTCACCGGAACCAGGCACAGGCCCCTGCT
CCTCAGATCCATCGTCTTCGCTTCCTCACAGCTTTCATCTTGATCAGGCTGTCCTCTCTT
TTTCACGGCATTGTCATGTAGGAGCTGGCCAGGGTCTTCTGGAAATATGCTGTTCCTTTC
TCCTTGCACCCTGCTGGCTTCTGGCTGATGCTGGAGCTTG

consensusID : consensus_2275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCAAGATGAAACCATTTAGACTTTATTACAGCAAGCAATAAATTAAAACGTAGATACACATGCATGCATTACACATTCATGACCATTATTTTCGTGAACAAGCAAGGTGACATGCATGCATTCACCAAGATAAAAGACTTAAATTACAAGGGTGTTACTGATGTTTGATGATCAACACCAAGCTATAGCAAGCATAGGTGCGCTCTGGCAGCTGTCTACAACTTAACCCTTCTTCATTCTCCCAGGTGGCAATAAGATAANGTCCC]

[-] EMBL AU097020             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCAAGATGAAACCATTTAGACTTTATTACAGCAAGCAATAAATTAAAACGTAGATACACATGCATGCATTACACATTCATGACCATTATTTTCGTGAACAAGCAAGGTGACATGCATGCATTCACCAAGATAAAAGACTTAAATTACAAGGGTGTTACTGATGTTTGATGATCAACACCAAGCTATAGCAAGCATAGGTGCGCTCTGGCAGCTGTCTACAACTTAACCCTTCTTCATTCTCCCAGGTGGCAATAAGATAANGTCCC]




>consensus_2275#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCAAGATGAAACCATTTAGACTTTATT
ACAGCAAGCAATAAATTAAAACGTAGATACACATGCATGCATTACACATTCATGACCATT
ATTTTCGTGAACAAGCAAGGTGACATGCATGCATTCACCAAGATAAAAGACTTAAATTAC
AAGGGTGTTACTGATGTTTGATGATCAACACCAAGCTATAGCAAGCATAGGTGCGCTCTG
GCAGCTGTCTACAACTTAACCCTTCTTCATTCTCCCAGGTGGCAATAAGATAANGTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2275#0      GCAAGGTGACATGCATGCATTCACCAAGATAAAAGACTTAAATTACAAGGGTGTTACTGA 60
consensus_2275#1      ------------------------------------------------------------
                                                                                  

consensus_2275#0      TGTTTGATGATCAACACCAAGCTATAGCAAGCATAGGTGCGCTCTGGCAGCTGTCTACAA 120
consensus_2275#1      ---------------------------------------------------TTTTTTTTT 9
                                                                         * * *    

consensus_2275#0      CTTAACCCTTCTTCATTCTTCCAGTGCATAATAATCCATTAATCCACCCAAAGAGATCAA 180
consensus_2275#1      TTTTTTTTTTTTTTTTTTTTTTTGTCAAGATGAAACCATTTAG--ACTTTATTACAGCAA 67
                       **     ** **  ** **   **  * *  ** ***** *   **   *  * * ***

consensus_2275#0      TCTCTAGCTAGACAAGAGCCACACACACACACACACACACTAC-CAGTTATATACTCTGT 239
consensus_2275#1      GCAATAAATTAAAA-----CGTAGATACACATGCATGCATTACACATTCATGACCATTAT 122
                       *  **  *  * *     *  * * *****  **  ** *** ** * **   *  * *

consensus_2275#0      TGTTGCACCCATCAAACCATGAGCATACACGTGCATAGCATCAAGAGGAACCAGCCTTTT 299
consensus_2275#1      TTTCGTG---AACAAGCAAGGTG-ACATGCATGCATT-CACCAAGATAAAAGA----CTT 173
                      * * *     * *** * * * * * *  * *****  ** *****  **  *     **

consensus_2275#0      CAGCAGGATGGCTGCTCCTGATGTTATGCAGCTAATTAAC-CCAAATGCAAGCATGCATG 358
consensus_2275#1      AAATTACAAGGGTGTTACTGATGTTT----GATGATCAACACCAAGCTATAGCAAGCATA 229
                       *     * ** ** * ********     * * ** *** ****     **** **** 

consensus_2275#0      CATGTGATGTAATATGTAAGATATGATCTCTATATTTCCATTGATTCTTCAGCTAGCTTA 418
consensus_2275#1      GGTGCGCTCTGGCA-GCTGTCTACAACT--TAACCCTTCTTCATTCTCCCAGGTGGC--A 284
                        ** * * *   * *     **  *    **    * * *   *    *** * **  *

consensus_2275#0      ATTAGCCAGCCGAGCCAGCCATTTCATTGGCCATGGCGCCCACAGAGATCACCGGACCAT 478
consensus_2275#1      ATAAGATAAN-GTCCC-------------------------------------------- 299
                      ** **  *   *  **                                            

consensus_2275#0      GCATCGATCTAGCGGCCGAACCCTATGCCGAAAGCCGGCGGCGCCGCCCAGTAGTCCGCC 538
consensus_2275#1      ------------------------------------------------------------
                                                                                  

consensus_2275#0      GGGCCGGCGTCGACGCCGACGTCCACCGTGCAGCTCACCGGAACCAGGCACAGGCCCCTG 598
consensus_2275#1      ------------------------------------------------------------
                                                                                  

consensus_2275#0      CTCCTCAGATCCATCGTCTTCGCTTCCTCACAGCTTTCATCTTGATCAGGCTGTCCTCTC 658
consensus_2275#1      ------------------------------------------------------------
                                                                                  

consensus_2275#0      TTTTTCACGGCATTGTCATGTAGGAGCTGGCCAGGGTCTTCTGGAAATATGCTGTTCCTT 718
consensus_2275#1      ------------------------------------------------------------
                                                                                  

consensus_2275#0      TCTCCTTGCACCCTGCTGGCTTCTGGCTGATGCTGGAGCTTG 760
consensus_2275#1      ------------------------------------------