These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1830 fasta sequence [CGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGGCAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTTTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTGTGTAGTGAGGATTCTCCTTGTGTGCCAATTGGTAGGAGCCCTCGTACTGGTGTGCTCCTAAAAGCTGAAAATGCCGTCCTTGAGGCAGGAGGAAGTGTTCTCCGGCTTGTAGGACTTTATATATCCTTACTAAGAGGCGACTTTGTTTCAAAACTTAATGCAAAAATATTATTAAATATACCTGTGCCCCCATACACTTCTGTAATAGAATGGACATAACTGTTATATCTCCTTGACATACCACACAAGAGTGATAAAGGTCCTCACATTTTTTGGTTATCGAAGGGAACTTTTGATTCACGTCCAGATCACATACTCAATCTGATACACTATGAAGTAAGACCTGATACTTATCTATGTTTGGATAATAACATAAATGAGTCACAAAAGAATGTCATTTTGTAATTTGTGCAGTCCACACAAGCTAACTTGTTCATTATATAGGTCTTTTGATATATGAAAAATGACATAGCAAAGTTTGTTATAGCCAAAGCTTTTACAATATTACACTTACGCAACTATTTTAGATTTATGCAGAAGAATTAAGTGGTAAAAGTTATGTTTATTGACTTGAAAAGTTTAAAATGACCACTGTGACCAGAGGGAGTAGTTTAGAATTCATTTAGATTTTGTGGAGTCAAAATAAGGTTTCACTACCTGGTTAGAACTAAGCCACTTGTTGCAGTATTTCTCTCTCCATAATATATGATACAAATAACAGAGAATCTGAAGTTTGATTGAACAGTAAATACAAATTGAAGCATCAAGCAATATTAAGAGCGGTCCAATTTAATAAAACTGGGAGAATTAACAAAGAAAATATTTTAGAGATCCATTTTATAATTCTTACATAGGCAGGCAATAAAGATTGCTGCATGCATGCGGTCTACATATTCCAAGTATTTGTAAGTATGTGCTTTTTCAATTGTTATTATTTGTAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAG] [+] EMBL AK072605 [CGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGGCAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTTTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTGTGTAGTGAGGATTCTCCTTGTGTGCCAATTGGTAGGAGCCCTCGTACTGGTGTGCTCCTAAAAGCTGAAAATGCCGTCCTTGAGGCAGGAGGAAGTGTTCTCCGGCTTGTAGGACTTTATATATCCTTACTAAGAGGCGACTTTGTTTCAAAACTTAATGCAAAAATATTATTAAATATACCTGTGCCCCCATACACTTCTGTAATAGAATGGACATAACTGTTATATCTCCTTGACATACCACACAAGAGTGATAAAGGTCCTCACATTTTTTGGTTATCGAAGGGAACTTTTGATTCACGTCCAGATCACATACTCAATCTGATACACTATGAAGTAAGACCTGATACTTATCTATGTTTGGATAATAACATAAATGAGTCACAAAAGAATGTCATTTTGTAATTTGTGCAGTCCACACAAGCTAACTTGTTCATTATATAGGTCTTTTGATATATGAAAAATGACATAGCAAAGTTTGTTATAGCCAAAGCTTTTACAATATTACACTTACGCAACTATTTTAGATTTATGCAGAAGAATTAAGTGGTAAAAGTTATGTTTATTGACTTGAAAAGTTTAAAATGACCACTGTGACCAGAGGGAGTAGTTTAGAATTCATTTAGATTTTGTGGAGTCAAAATAAGGTTTCACTACCTGGTTAGAACTAAGCCACTTGTTGCAGTATTTCTCTCTCCATAATATATGATACAAATAACAGAGAATCTGAAGTTTGATTGAACAGTAAATACAAATTGAAGCATCAAGCAATATTAAGAGCGGTCCAATTTAATAAAACTGGGAGAATTAACAAAGAAAATATTTTAGAGATCCATTTTATAATTCTTACATAGGCAGGCAATAAAGATTGCTGCATGCATGCGGTCTACATATTCCAAGTATTTGTAAGTATGTGCTTTTTCAATTGTTATTATTTGTAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAG] consensusID : consensus_2287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1024 fasta sequence [GCAGGGCGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGACAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTCTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTATGTAGTGAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAGCATTGATGTGAATGTGATTCCTCTGGCAGTTGTTTTTTCTTTGGTTATTCTCAGTATGTGAGAGCATATGTGTTGATTTGATTTGTAATGTATGATAATTCATTATTACATAATCGACT] [+] EMBL AK063804 [GCAGGGCGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGACAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTCTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTATGTAGTGAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAGCATTGATGTGAATGTGATTCCTCTGGCAGTTGTTTTTTCTTTGGTTATTCTCAGTATGTGAGAGCATATGTGTTGATTTGATTTGTAATGTATGATAATTCATTATTACATAATCGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2287#0 ------CGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCC 54 consensus_2287#1 GCAGGGCGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCC 60 ****************************************************** consensus_2287#0 GCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCA 114 consensus_2287#1 GCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCA 120 ************************************************************ consensus_2287#0 CGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCAC 174 consensus_2287#1 CGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCAC 180 ************************************************************ consensus_2287#0 GCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATG 234 consensus_2287#1 GCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATG 240 ************************************************************ consensus_2287#0 GCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTG 294 consensus_2287#1 GCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTG 300 ************************************************************ consensus_2287#0 CTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGT 354 consensus_2287#1 CTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGT 360 ************************************************************ consensus_2287#0 CATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTG 414 consensus_2287#1 CATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTG 420 ************************************************************ consensus_2287#0 AAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGGCA 474 consensus_2287#1 AAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGACA 480 ********************************************************* ** consensus_2287#0 GATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTTTTTC 534 consensus_2287#1 GATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTCTTTC 540 ******************************************************* **** consensus_2287#0 CTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTGTGTAGTGAGGAT 594 consensus_2287#1 CTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTATGTAGTGAGGAT 600 *********************************************** ************ consensus_2287#0 TCTCCTTGTGTGCCAATTGGTA---------GGAGCCCTCGTACTGGTGTGCTCCTAAAA 645 consensus_2287#1 GCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGT 660 ** *** * * ****** * **** * *** ** **** * * consensus_2287#0 GCTGAAAAT--GCCGTCCTTGAGGCAGGAGGAAGTGTTCTCCGGCTTGTAGGACTTTATA 703 consensus_2287#1 TGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTG-TTAATAGAAGTGGGAA 719 *** *** *** * ***** ** * ** * * * *** * * * consensus_2287#0 TATCCTTACTAAGAGGCGACTTTGTTTCAAAACTTAATGCAAAAATATTATTAAATATAC 763 consensus_2287#1 ATTTGATACGAAGTTTCAAGGCT-TCACAGGGACTGATG---GTCCTTTAGGGAAGAGGA 775 * *** *** * * * * ** * *** *** ** * consensus_2287#0 CTGTGCCCCCATACACTTCTGTAATAGAATGGACA-TAACTGTTATATCTC--CTTGACA 820 consensus_2287#1 TGGAGAATTCCAAAACTCGTGCTG-AGATTGGGTGGCAACCGAAGTATCCAAGCTTCACA 834 * * * * *** ** *** *** *** * **** *** *** consensus_2287#0 TACCACACAAGAGTGATAAAGGTCCTCACATTTTTTGGTTATCGAAGGGAACTTTTGATT 880 consensus_2287#1 GAATTCCTTGGTTTGAGCAA-----TTAGTATCCATGTATATCACAACATTTTACGGTTT 889 * * * *** ** * * * ** **** * * * ** consensus_2287#0 CACGTCCAGATCACATACTCAATCTGATACACTATGAAGTAAGACCTGATACTTATCTAT 940 consensus_2287#1 CAATTCAATATTAAAGCATTGATGTGA------ATGTGATTCC-TCTGGCAGTTGTTTTT 942 ** ** * ** * * * ** *** *** * *** * ** * * * consensus_2287#0 GTTTGGATAATAACATAAATGAGTCACAAAAGAATGTCATTTTGTAATTTGTGCAGTCCA 1000 consensus_2287#1 TCTTTGGT--TATTCTCAGTATGTGAGAGCATA-TGTGTTGATTTGATTTGTA------A 993 ** * * ** * * * ** * * * * *** * * * ****** * consensus_2287#0 CACAAGCTAACTTGTTCATTATATAGGTCTTTTGATATATGAAAAATGACATAGCAAAGT 1060 consensus_2287#1 TGTATGATAATTCATT-ATTACATAATCGACT---------------------------- 1024 * * *** * ** **** *** * consensus_2287#0 TTGTTATAGCCAAAGCTTTTACAATATTACACTTACGCAACTATTTTAGATTTATGCAGA 1120 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 AGAATTAAGTGGTAAAAGTTATGTTTATTGACTTGAAAAGTTTAAAATGACCACTGTGAC 1180 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 CAGAGGGAGTAGTTTAGAATTCATTTAGATTTTGTGGAGTCAAAATAAGGTTTCACTACC 1240 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 TGGTTAGAACTAAGCCACTTGTTGCAGTATTTCTCTCTCCATAATATATGATACAAATAA 1300 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 CAGAGAATCTGAAGTTTGATTGAACAGTAAATACAAATTGAAGCATCAAGCAATATTAAG 1360 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 AGCGGTCCAATTTAATAAAACTGGGAGAATTAACAAAGAAAATATTTTAGAGATCCATTT 1420 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 TATAATTCTTACATAGGCAGGCAATAAAGATTGCTGCATGCATGCGGTCTACATATTCCA 1480 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 AGTATTTGTAAGTATGTGCTTTTTCAATTGTTATTATTTGTAGGATGCTGCTTCTCTTGC 1540 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 AATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCC 1600 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 TCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTT 1660 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 TCAAGGCTTCACAGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGT 1720 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 GCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAAT 1780 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 TAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAG 1830 consensus_2287#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||