cluster # 2307

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Oryza sativa
cluster # 2307 cluster # 2307 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2307#0 length = 461 sequences # 1

consensus_2307#1 length = 444 sequences # 1

consensusID : consensus_2307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [GGACCATATCCACGCCGAAGTTTCCCACCGCCCCGGGCACCCGCTCCCGATCTACGCTACCACTTCGCCTCCGCCGCCAGTCTCAACCGCCAGGACACAGTCGTCGCACACAGCCACCAGTGGCCCGCCAGGCAGCAGGTCGTCTGCTGCGGCGGCAGGCAAGTACACGCCGCAGCACGCACGTACTACTACGCGCCCCCTGCCAGGCTACGTCCCGTACTGACAAACAACTCCGCTGCCTCGCCTCCGGTGCTGCTCGCTCATGCGCCGTTGGTTATTATTATTACGTGATGGGCTGCTTATCTCTTACTGCTGGCTTGTGGTGTAGTAGTATAATACTCCAGTATATATATAGCGATTATAAAGGAGTAACATGTATACATGGACAAGTGTGTATTTCATATACTCCAGTACATCTGTATTTTGGAATTTGGAATAATACGTCGTGTATCAAAAAAAAA]

[+] EMBL BI798774             [GGACCATATCCACGCCGAAGTTTCCCACCGCCCCGGGCACCCGCTCCCGATCTACGCTACCACTTCGCCTCCGCCGCCAGTCTCAACCGCCAGGACACAGTCGTCGCACACAGCCACCAGTGGCCCGCCAGGCAGCAGGTCGTCTGCTGCGGCGGCAGGCAAGTACACGCCGCAGCACGCACGTACTACTACGCGCCCCCTGCCAGGCTACGTCCCGTACTGACAAACAACTCCGCTGCCTCGCCTCCGGTGCTGCTCGCTCATGCGCCGTTGGTTATTATTATTACGTGATGGGCTGCTTATCTCTTACTGCTGGCTTGTGGTGTAGTAGTATAATACTCCAGTATATATATAGCGATTATAAAGGAGTAACATGTATACATGGACAAGTGTGTATTTCATATACTCCAGTACATCTGTATTTTGGAATTTGGAATAATACGTCGTGTATCAAAAAAAAA]




>consensus_2307#0
GGACCATATCCACGCCGAAGTTTCCCACCGCCCCGGGCACCCGCTCCCGATCTACGCTAC
CACTTCGCCTCCGCCGCCAGTCTCAACCGCCAGGACACAGTCGTCGCACACAGCCACCAG
TGGCCCGCCAGGCAGCAGGTCGTCTGCTGCGGCGGCAGGCAAGTACACGCCGCAGCACGC
ACGTACTACTACGCGCCCCCTGCCAGGCTACGTCCCGTACTGACAAACAACTCCGCTGCC
TCGCCTCCGGTGCTGCTCGCTCATGCGCCGTTGGTTATTATTATTACGTGATGGGCTGCT
TATCTCTTACTGCTGGCTTGTGGTGTAGTAGTATAATACTCCAGTATATATATAGCGATT
ATAAAGGAGTAACATGTATACATGGACAAGTGTGTATTTCATATACTCCAGTACATCTGT
ATTTTGGAATTTGGAATAATACGTCGTGTATCAAAAAAAAA

consensusID : consensus_2307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [TATGCAGCGGCGAAGGTTGCCAGCCGCCGCCAGGGCAGCCGCTGCCGATCTACGGCTACCCTTCGCCTCCGCCGCCGTCTCAACCGGCCGGACCGTCGTCGCACACGCCACCGTGCCCGCCGGCGGCGGTCGTCTGCTGCGGCGGCGGCGGCGGCGGCGGGCAGTACACGCCGCAGCAGCCGTACTACTACGCGCCCCCTGCCGGCTACGTCCCGTACTACAACAACTCCGCTGCCTCGCCTCCGGTGCTGCTCGCTCATGCGGCCGTTGGTTATTATTATTACGTGATGGCTGCTTATCTCTTACTCTGGCTTGTGGTGTAGTAGTATAATACTCCAGTATATATATAGCGATTATAAAGGAGTAACATGTATACATGGACAAGTGTGTATTTCATATACTCCAGTACATCTGTGTTTTGGAATTTGGAATAATACGGTCGTG]

[+] EMBL AK107815             [TATGCAGCGGCGAAGGTTGCCAGCCGCCGCCAGGGCAGCCGCTGCCGATCTACGGCTACCCTTCGCCTCCGCCGCCGTCTCAACCGGCCGGACCGTCGTCGCACACGCCACCGTGCCCGCCGGCGGCGGTCGTCTGCTGCGGCGGCGGCGGCGGCGGCGGGCAGTACACGCCGCAGCAGCCGTACTACTACGCGCCCCCTGCCGGCTACGTCCCGTACTACAACAACTCCGCTGCCTCGCCTCCGGTGCTGCTCGCTCATGCGGCCGTTGGTTATTATTATTACGTGATGGCTGCTTATCTCTTACTCTGGCTTGTGGTGTAGTAGTATAATACTCCAGTATATATATAGCGATTATAAAGGAGTAACATGTATACATGGACAAGTGTGTATTTCATATACTCCAGTACATCTGTGTTTTGGAATTTGGAATAATACGGTCGTG]




>consensus_2307#1
TATGCAGCGGCGAAGGTTGCCAGCCGCCGCCAGGGCAGCCGCTGCCGATCTACGGCTACC
CTTCGCCTCCGCCGCCGTCTCAACCGGCCGGACCGTCGTCGCACACGCCACCGTGCCCGC
CGGCGGCGGTCGTCTGCTGCGGCGGCGGCGGCGGCGGCGGGCAGTACACGCCGCAGCAGC
CGTACTACTACGCGCCCCCTGCCGGCTACGTCCCGTACTACAACAACTCCGCTGCCTCGC
CTCCGGTGCTGCTCGCTCATGCGGCCGTTGGTTATTATTATTACGTGATGGCTGCTTATC
TCTTACTCTGGCTTGTGGTGTAGTAGTATAATACTCCAGTATATATATAGCGATTATAAA
GGAGTAACATGTATACATGGACAAGTGTGTATTTCATATACTCCAGTACATCTGTGTTTT
GGAATTTGGAATAATACGGTCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2307#0      GGACCATATCCA-CGCCGAAGTTTCCCA-CCGCCCC--GGGCACCCGCTCCCGATCTACG 56
consensus_2307#1      ------TATGCAGCGGCGAAGGTTGCCAGCCGCCGCCAGGGCAGCCGCTGCCGATCTACG 54
                            *** ** ** ***** ** *** ***** *  ***** ***** **********

consensus_2307#0      CTACCACTTCGCCTCCGCCGCCAGTCTCAACCGCCAGGACACAGTCGTCGCACACAGCCA 116
consensus_2307#1      GCTACCCTTCGCCTCCGCCGCC-GTCTCAACCGGCCGGAC--CGTCGTCGCACAC-GCCA 110
                          * **************** ********** * ****   ************ ****

consensus_2307#0      CCAGTGGCCCGCCAGGCAGCAGGTCGTCTGCTGCGGCGGCAG-----------GCAAGTA 165
consensus_2307#1      CCGT--GCCCGCC-GGCGGC-GGTCGTCTGCTGCGGCGGCGGCGGCGGCGGCGGGCAGTA 166
                      **    ******* *** ** ******************* *           *  ****

consensus_2307#0      CACGCCGCAGCACGCACGTACTACTACGCGCCCCCTGCCAGGCTACGTCCCGTACTGACA 225
consensus_2307#1      CACGCCGCAGCA-GC-CGTACTACTACGCGCCCCCTGCC-GGCTACGTCCCGTACTA--C 221
                      ************ ** *********************** ****************    

consensus_2307#0      AACAACTCCGCTGCCTCGCCTCCGGTGCTGCTCGCTCATGCG-CCGTTGGTTATTATTAT 284
consensus_2307#1      AACAACTCCGCTGCCTCGCCTCCGGTGCTGCTCGCTCATGCGGCCGTTGGTTATTATTAT 281
                      ****************************************** *****************

consensus_2307#0      TACGTGATGGGCTGCTTATCTCTTACTGCTGGCTTGTGGTGTAGTAGTATAATACTCCAG 344
consensus_2307#1      TACGTGATGG-CTGCTTATCTCTTACT-CTGGCTTGTGGTGTAGTAGTATAATACTCCAG 339
                      ********** **************** ********************************

consensus_2307#0      TATATATATAGCGATTATAAAGGAGTAACATGTATACATGGACAAGTGTGTATTTCATAT 404
consensus_2307#1      TATATATATAGCGATTATAAAGGAGTAACATGTATACATGGACAAGTGTGTATTTCATAT 399
                      ************************************************************

consensus_2307#0      ACTCCAGTACATCTGTATTTTGGAATTTGGAATAATACG-TCGTGTATCAAAAAAAAA 461
consensus_2307#1      ACTCCAGTACATCTGTGTTTTGGAATTTGGAATAATACGGTCGTG------------- 444
                      **************** ********************** *****