These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1786 fasta sequence [GAAGAAACGCAAAAAACAAGGTCACACAACAAACACAGGACATCACCATCCCCCCATCCGTCTATAGGTTAAAAAGCCCAGCACCAAGCGCAACCATCAAGCTTTCGTCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCTATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGACAAGTTGACGCCTTCTGCCTTTGAGAAACACTCTGGAAGGCAGACTGCTGGAAAGTGGAGGAATACTGTGTGGGTCATGGTTCAAGGAGAGAAGGTTCCATTGTCAAAGACAGCTCTGCTGAAATACTACTCGCTGTCTCACAAATCTGCTAATGGTTCTAACAAAGGCCGTAATGGTCGCCTGTCACACCGAGATGAGTTTATTCACTGTACGGAATGTGGCAAGGAGAGGAGGTTTCGGCTCCGGTCTAAAGAAGAGTGCCGTATTTACCATGATGCTCTTGCTAAACCTAACTGGACATGTGCTGATTTGACAACTGATAGGGTCACCTGCGGCGATGAGGAGGAGCGCGCGAGCCGCAAGGTGCTGAGAGGCTGCTCCCGCTCCACGTCGTGCACCGGCTGCGTGAAGTGCGTGTGCTTCGGGTGCGAGGTCTGCCGCTTCACCGACTGCGGGTGCCAGACCTGCGTCGACTTCTACCATAACTCCAAGGAGTAGGAGGATGAAACAATGCATGAAACACCACCATGGGACATGGTAGGATGAAACACCAGCATGGTCGATATACCCTTGCAGACCCAGATGTTTTTTAGTCAAACCCCCCAGGTCCAATGATTCCCCGGCTTCACTGGGGGGGGCCTCCTATTCTGAGAACTGAGATGTTCTTTGACTAGCTTCTTCCCATAGACAACAACTAGTACCGGGGAAAGCCGGCCGATTTTTGCTTCATATAATTTACCAAAATTCTATTCA] [+] EMBL AK064375 [GAAGAAACGCAAAAAACAAGGTCACACAACAAACACAGGACATCACCATCCCCCCATCCGTCTATAGGTTAAAAAGCCCAGCACCAAGCGCAACCATCAAGCTTTCGTCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCTATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGACAAGTTGACGCCTTCTGCCTTTGAGAAACACTCTGGAAGGCAGACTGCTGGAAAGTGGAGGAATACTGTGTGGGTCATGGTTCAAGGAGAGAAGGTTCCATTGTCAAAGACAGCTCTGCTGAAATACTACTCGCTGTCTCACAAATCTGCTAATGGTTCTAACAAAGGCCGTAATGGTCGCCTGTCACACCGAGATGAGTTTATTCACTGTACGGAATGTGGCAAGGAGAGGAGGTTTCGGCTCCGGTCTAAAGAAGAGTGCCGTATTTACCATGATGCTCTTGCTAAACCTAACTGGACATGTGCTGATTTGACAACTGATAGGGTCACCTGCGGCGATGAGGAGGAGCGCGCGAGCCGCAAGGTGCTGAGAGGCTGCTCCCGCTCCACGTCGTGCACCGGCTGCGTGAAGTGCGTGTGCTTCGGGTGCGAGGTCTGCCGCTTCACCGACTGCGGGTGCCAGACCTGCGTCGACTTCTACCATAACTCCAAGGAGTAGGAGGATGAAACAATGCATGAAACACCACCATGGGACATGGTAGGATGAAACACCAGCATGGTCGATATACCCTTGCAGACCCAGATGTTTTTTAGTCAAACCCCCCAGGTCCAATGATTCCCCGGCTTCACTGGGGGGGGCCTCCTATTCTGAGAACTGAGATGTTCTTTGACTAGCTTCTTCCCATAGACAACAACTAGTACCGGGGAAAGCCGGCCGATTTTTGCTTCATATAATTTACCAAAATTCTATTCA] consensusID : consensus_2315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1369 fasta sequence [TCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCCATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGGTCCGTGCTCGCCACTGTGCATCATCAGTACACCACGTCCTTTTTGCTTGCTTGCTTGTTTGTCTCGTTGTTCTTGATTTCATGTCAGCGCGCGCGTCGGTGCACGGGTGGTGTTTGATCTCTTTGGTTGTGGCGTCTTGCTCCCATGACTGGACCTGCATGCAATGCCGGCTCATGCGCCTCGCCGCTGCCTGCGCCCAGCGTCGCCTGTTTCTTGTACTTTGTACCATGCTCCTGCCCATGCATTGCTAGTCTGGCTCGCGGGACTGTCGATTTCGGCAATTAAATCATCCCCTTTTCTGCAATCTGCATGTTCATGATGTATCTTTTTTTTTAGACATGTCCATGATGTATCTGAGCGTAATATCGCCTGCATCTTACCTTTGGTTTAGGACCATTAGGTTCCTCTTCTTCTGTGGTACCTAATGCACGTAAGTTGAATTTT] [+] EMBL AK108614 [TCTCGGCAGCTCTTGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTCCACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTGCTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCCATCTTTTTTGGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGAGCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACATATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGATCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCTCCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCGCTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGCCTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTGATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTTATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAACGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCGGTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGTGGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGGGTGTCGCGAAGGTCCGTGCTCGCCACTGTGCATCATCAGTACACCACGTCCTTTTTGCTTGCTTGCTTGTTTGTCTCGTTGTTCTTGATTTCATGTCAGCGCGCGCGTCGGTGCACGGGTGGTGTTTGATCTCTTTGGTTGTGGCGTCTTGCTCCCATGACTGGACCTGCATGCAATGCCGGCTCATGCGCCTCGCCGCTGCCTGCGCCCAGCGTCGCCTGTTTCTTGTACTTTGTACCATGCTCCTGCCCATGCATTGCTAGTCTGGCTCGCGGGACTGTCGATTTCGGCAATTAAATCATCCCCTTTTCTGCAATCTGCATGTTCATGATGTATCTTTTTTTTTAGACATGTCCATGATGTATCTGAGCGTAATATCGCCTGCATCTTACCTTTGGTTTAGGACCATTAGGTTCCTCTTCTTCTGTGGTACCTAATGCACGTAAGTTGAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2315#0 GAAGAAACGCAAAAAACAAGGTCACACAACAAACACAGGACATCACCATCCCCCCATCCG 60 consensus_2315#1 ------------------------------------------------------------ consensus_2315#0 TCTATAGGTTAAAAAGCCCAGCACCAAGCGCAACCATCAAGCTTTCGTCTCGGCAGCTCT 120 consensus_2315#1 -----------------------------------------------TCTCGGCAGCTCT 13 ************* consensus_2315#0 TGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTC 180 consensus_2315#1 TGGCTCCGCCTCCTATCCTCTCCTCTTCCCCTACTCTCCTCTCTTCTCTCTCTCCGCCTC 73 ************************************************************ consensus_2315#0 CACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTG 240 consensus_2315#1 CACCAGTCTCCCCCTCTCCCTCTCCAAACCCTCCATAGCTATAGGCAGCAGCTGGGGGTG 133 ************************************************************ consensus_2315#0 CTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCTATCTTTTTT 300 consensus_2315#1 CTGGCGGCGTTGAGGCATTCTTGAATCCGGCGTGGTCGCTTCCCCAGATCCATCTTTTTT 193 ************************************************** ********* consensus_2315#0 GGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGA 360 consensus_2315#1 GGATCGTTTCTTCGGGCGATTTGGAGGAGCAAAGAAAGCCCTCCCAAATCGCAGAAAGGA 253 ************************************************************ consensus_2315#0 GCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACAT 420 consensus_2315#1 GCCGCCTTTGCGAAGCTCCTGCTGCCTTCTCTGCTCGTTGTTCCTGGCCTGGGATCACAT 313 ************************************************************ consensus_2315#0 ATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGA 480 consensus_2315#1 ATCCCCGCAAGGAAAAAAAAGGAGCCGCCTTTGCATTTATTCTTTTGGCCCCTTGGGAGA 373 ************************************************************ consensus_2315#0 TCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCT 540 consensus_2315#1 TCGCCCTCGTCAAGATTTGGTGGGAAGTGGGAACCCAATTCGCTCGCGGTTCTCACTTCT 433 ************************************************************ consensus_2315#0 CCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCG 600 consensus_2315#1 CCTTGTGTGGAAAGGCGCCGCTTTGGCTCCTGTTTCCCCCCACCGCTCGCTCCCGCGCCG 493 ************************************************************ consensus_2315#0 CTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGC 660 consensus_2315#1 CTCCTCTCCCTATATATCTATCTCTCTGACTATCTTGTTCACATACGCCTGCGCGCCTGC 553 ************************************************************ consensus_2315#0 CTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTG 720 consensus_2315#1 CTAACTTTGTTTTACTTCGATCCATCCACCGGTTTTCGGCATCCCCCGTCTCGGCATTTG 613 ************************************************************ consensus_2315#0 ATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTT 780 consensus_2315#1 ATCGTTGCTTAGTCGCTTGTTGATTTGACGCAGGCCAGATCGCTGTCTGGCGCTTGTTTT 673 ************************************************************ consensus_2315#0 ATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAA 840 consensus_2315#1 ATTTTGAGTTGTTGCGGTGTGTTTGCTGTTCTTGGTTGGAGGCATGGCTGCGGCGGCGAA 733 ************************************************************ consensus_2315#0 CGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCG 900 consensus_2315#1 CGGAGGTGGCGCGGCGCTGTTCAGCGAGGAGGAGCTGCGGGACGTCAGCGGGGTGCGCCG 793 ************************************************************ consensus_2315#0 GTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGT 960 consensus_2315#1 GTGCGAGGATTTCGTGGAGGTGACGTGCGGGTGCACCAGCCACCGCTACGGCGACGCCGT 853 ************************************************************ consensus_2315#0 GGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGG 1020 consensus_2315#1 GGGCCGCCTCCGCGTCTACGCTTCCGGCGACCTCGAGGTCAGCTGCGAGTGCACGCCCGG 913 ************************************************************ consensus_2315#0 GTGTCGCGAAGACAAGTTGACGCCTTCTGCCTTTGAGAAACACTCTGGAAGGCAGACTGC 1080 consensus_2315#1 GTGTCGCGAAGGTCCGTGCTCGCCA-CTGTGCATCATCAGTACACCACGTC-CTTTTTGC 971 *********** ** **** *** * * * ** * * *** consensus_2315#0 TGGAAAGTGGAGGAATACTGTGTGGGTCATGGTTCAAGGAGAGAAGGTTCCATTGTCAAA 1140 consensus_2315#1 TTGCTTGC---------TTGTTTGTCTCGTTGTTCTTGA--------TTTCAT-GTCAGC 1013 * * * *** ** ** * **** * ** *** **** consensus_2315#0 GACAGCTCTGCTGAAATACTACTCGCTGTCTCACAAATCTGCTAATGGT-TCTAACAAAG 1199 consensus_2315#1 GCGCGCGTCGGTGCACGGGT----GGTGTTTGATCTCTTTGGTTGTGGCGTCTTGCTCCC 1069 * ** * ** * * * *** * * * ** * *** *** * consensus_2315#0 GCCGTAATGGTCGCCTGTCACACCGAGATGAGTTTATTCACTGTACGGAATGTGGCAAGG 1259 consensus_2315#1 ATGACTGGACCTGCATGCAATGCCG-GCTCATGCGCCTCGCCG--CTGCCTGCGCCCAGC 1126 ** ** * *** * * * ** * * * * ** * * ** consensus_2315#0 AGAGGAGGTTTCGGCTCCGGTCTAAAGAAGAGTGCCGTATTTACCATGATGCTCTTGCTA 1319 consensus_2315#1 GTCGCCTGTTTC--TTGTACTTTGTACCATGCTCCTGCCCATGCATTGCTAGTCTGGCTC 1184 * ***** * * * * * * * * * * ** * *** *** consensus_2315#0 AACCTAACTGGACATGTGCTGATTT-GACAACTGA-TAGGGTCACCTGCGGCGATGAGGA 1377 consensus_2315#1 ------GCGGGAC---TGTCGATTTCGGCAATTAAATCATCCCCTTTTCTGCAATCTGCA 1235 * **** ** ***** * *** * * * * * * ** ** * * consensus_2315#0 GGAGCGCG-CGAGCCGCAAGGTGCTGAGAGGCTGCTCCCGCTCCACGTCGTG-CACCGGC 1435 consensus_2315#1 TGTTCATGATGTATCTTTTTTTTTAGACATGTCCATGATGTATCTGAGCGTAATATCGCC 1295 * * * * * * ** * * * * * *** * ** * consensus_2315#0 TGCGTGAAGTGCGTGTGCTTCGGGTGCGAGGTCTGCCGCTTCACCGACTGCGGGTGCCAG 1495 consensus_2315#1 TGCATC--TTACCTTTGGTTTAGGACCATTAGGTTCCTCTTCTTCTGTGGTACCTAATGC 1353 *** * * * * ** ** ** * * ** **** * * * consensus_2315#0 ACCTGCGTCGACTTCTACCATAACTCCAAGGAGTAGGAGGATGAAACAATGCATGAAACA 1555 consensus_2315#1 ACGTAAGTTGAATTTT-------------------------------------------- 1369 ** * ** ** ** * consensus_2315#0 CCACCATGGGACATGGTAGGATGAAACACCAGCATGGTCGATATACCCTTGCAGACCCAG 1615 consensus_2315#1 ------------------------------------------------------------ consensus_2315#0 ATGTTTTTTAGTCAAACCCCCCAGGTCCAATGATTCCCCGGCTTCACTGGGGGGGGCCTC 1675 consensus_2315#1 ------------------------------------------------------------ consensus_2315#0 CTATTCTGAGAACTGAGATGTTCTTTGACTAGCTTCTTCCCATAGACAACAACTAGTACC 1735 consensus_2315#1 ------------------------------------------------------------ consensus_2315#0 GGGGAAAGCCGGCCGATTTTTGCTTCATATAATTTACCAAAATTCTATTCA 1786 consensus_2315#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||