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Oryza sativa
cluster # 2331 cluster # 2331       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2331#0 length = 1675 sequences # 2  

consensusID : consensus_2331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1675
fasta sequence
                              [CTCTCTCCATAGGACTAGTCTGAACTAGAGGGGATTAACTAGGGTTTAATCAACCGCGTCGAGGACCATGGCGGCCGCAGCGGAGGTGGATGCGGAGGCGAGGAGCATCCTCGAACGCGCAGCGGCGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCACCATGCCTTTCTCTTACGGCATCAGTTCTGCATTCGTTTCTTGAAGAGCATGACGATTCCGCAAAAAGTGGGTCTTGTTCATGTTTGTCAAAAGATGAGGCGTACTGCTCTATTTGCTTTGGAGTGTTACTGCCCACCTGCTATCAAGATGATGGTGTAGAACCACTCCGTAGTGTTTCTCCTATCGATAATGTTACTTCAATTATATCTGAAGCAGTCCAGAGAGAGGGTCACCAAGTCGATGAGTTCTCCCTAGAAATTTCACTGCGTGCAGTTATAGCAGCTAATGATCGTGCCATTAGGTTATATATGAAAGAGAAATATGGCAGTGCAAATTGGTTCGATGAAAAAATATTTTCTCAACAGACAATGTCAGTGAAGGAGGCCTTGAGAATATTGCTAGTACCGTCAGTAGAAAAACAAATGAATGTGAAACATGGTAATAATTCATTTCGAATTCGCTTAACTTATACTCATGATGAAGGTTCACAAAAGCTTCTAAGGCTTCTGCCAAATGACCGTGGTCGTAAAAGAAAAACAGAATCAAGAGATGGAAGCAGTAAAAGGGGCTCAACAGATGATGATAAACAAATATTAAGTGAATCAGATGCATTCATCAACAAGAACCTTGAAGGCATTCAAGATCAAGACTTCCGTAGTTTATTTCAATTGCCACCTGAAAAGGTGTTAGAACCCTGCCATCTTGTGATATCTTGCCAACGGTCACCCATATATATTGGTGGAAGATACTTGAAGCTTTCAAGGAATGTCAGCCAGTCATGTTGGATAATTGATGATGAGAGAATGGGGGAAGCATCAGTTGAGGAGATAATTGGGGAGAATGTCCGTGCCATCTGCAAAGGTGATGGCTATAAGTTCCATGCTGCTGGAAGAGAAGATATTGATGTTCGGATGCTTGGATCTGGTCGTCCATTCTTAGTTGAAGTCTTGAATGTGCGATCTATTCCATCTGCTACTGAAGTTCAACAAATAGCAGATAAGATTAATGACTCTGAAAAGAAACATGTCAGGGTTAGAAATCTCAAGCTGGTAGGCAGTGAAATATGGACAATGATGCGGGAAGGAGAAGCAGAGAAGCAGAAGCAGTATGCTGCCCTCATATGGACGTCTCGCCCTCTGACGGATGATGACCTACATAATATTTCTCTTATCAAAGATATGGAAATTGTACAAAAGACGCCAATAAGAGTCTTACATCGTAGAAGTCCATTAGAGAGAAAACGGATTATACACTGGATGGAGATTGAAAAAATTTCTGGCGGGTCAAACTATTACCTGTTGCATCTATGCACTCAAGCTGGGACGTACATAAAGGAGTTTGTGCACGGAGGTCTTGGACGCACACACCCAAGTGTTGGCGTCATGTTAAGCTGCAGAGCTGAGATACTGCAACTCGATGTCACTGACGTTAAGATGGACTTCCTGCAG]

[+] EMBL AK067397             [CTCTCTCCATAGGACTAGTCTGAACTAGAGGGGATTAACTAGGGTTTAATCAACCGCGTCGAGGACCATGGCGGCCGCAGCGGAGGTGGATGCGGAGGCGAGGAGCATCCTCGAACGCGCAGCGGCGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGGTCTGTGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCACCATGCCTTTCTCTTACGGCATCAGTTCTGCATTCGTTTCTTGAAGAGCATGACGATTCCGCAAAAAGTGGGTCTTGTTCATGTTTGTCAAAAGATGAGGCGTACTGCTCTATTTGCTTTGGAGTGTTACTGCCCACCTGCTATCAAGATGATGGTGTAGAACCACTCCGTAGTGTTTCTCCTATCGATAATGTTACTTCAATTATATCTGAAGCAGTCCAGAGAGAGGGTCACCAAGTCGATGAGTTCTCCCTAGAAATTTCACTGCGTGCAGTTATAGCAGCTAATGATCGTGCCATTAGGTTATATATGAAAGAGAAATATGGCAGTGCAAATTGGTTCGATGAAAAAATATTTTCTCAACAGACAATGTCAGTGAAGGAGGCCTTGAGAATATTGCTAGTACCGTCAGTAGAAAAACAAATGAATGTGAAACATGGTAATAATTCATTTCGAATTCGCTTAACTTATACTCATGATGAAGGTTCACAAAAGCTTCTAAGGCTTCTGCCAAATGACCGTGGTCGTAAAAGAAAAACAGAATCAAGAGATGGAAGCAGTAAAAGGGGCTCAACAGATGATGATAAACAAATATTAAGTGAATCAGATGCATTCATCAACAAGAACCTTGAAGGCATTCAAGATCAAGACTTCCGTAGTTTATTTCAATTGCCACCTGAAAAGGTGTTAGAACCCTGCCATCTTGTGATATCTTGCCAACGGTCACCCATATATATTGGTGGAAGATACTTGAAGCTTTCAAGGAATGTCAGCCAGTCATGTTGGATAATTGATGATGAGAGAATGGGGGAAGCATCAGTTGAGGAGATAATTGGGGAGAATGTCCGTGCCATCTGCAAAGGTGATGGCTATAAGTTCCATGCTGCTGGAAGAGAAGATATTGATGTTCGGATGCTTGGATCTGGTCGTCCATTCTTAGTTGAAGTCTTGAATGTGCGATCTATTCCATCTGCTACTGAAGTTCAACAAATAGCAGATAAGATTAATGACTCTGAAAAGAAACATGTCAGGGTTAGAAATCTCAAGCTGGTAGGCAGTGAAATATGGACAATGATGCGGGAAGGAGAAGCAGAGAAGCAGAAGCAGTATGCTGCCCTCATATGGACGTCTCGCCCTCTGACGGATGATGACCTACATAATATTTCTCTTATCAAAGATATGGAAATTGTACAAAAGACGCCAATAAGAGTCTTACATCGTAGAAGTCCATTAGAGAGAAAACGGATTATACACTGGATGGAGATTGAAAAAATTTCTGGCGGGTCAAACTATTACCTGTTGCATCTATGCACTCAAGCTGGGACGTACATAAAGGAGTTTGTGCACGGAGGTCTTGGACGCACACACCCAAGTGTTGGCGTCATGTTAAGCTGCAGAGCTGAGATACTGCAACTCGATGTCACTGACGTTAAGATGGACTTCCTGCA ]
[-] EMBL CA762047             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCTGAAAAGAAACATGTCAGGGTTAGAAATCTCAAGCTGGTAGGCAGTGAAATATGGACAATGATGCGGGAAGGAGAAGCAGAGAAGCAGAAGCAGTATGCTGCCCTCATATGGACGTCTCGCCCTCTGACGGATGATGACCTACATAATATTTCTCTTATCAAAGATATGGAAATTGTACAAAAGACGCCAATAAGAGTCTTACATCGTAGAAGTCCATTAGAGAGAAAACGGATTATACACTGGATGGAGATTGAAAAAATTTCTGGCGGGTCAAACTATTACCTGTTGCATCTATGCACTCAAGCTGGGACATACATAAAGGAGTTTGTGCACGGAGATCTTGGACGCACACACCCAAGTGTTGGCGTCATGTTAAGCTGCAGAGCTGAGATACTGCAACTCGATGTCACTGACGTTAAGATGGACTTCCTGCAG]


>consensus_2331#0 CTCTCTCCATAGGACTAGTCTGAACTAGAGGGGATTAACTAGGGTTTAATCAACCGCGTC GAGGACCATGGCGGCCGCAGCGGAGGTGGATGCGGAGGCGAGGAGCATCCTCGAACGCGC AGCGGCGTCCTCCTTCCCACCGCTCCACGCCATCCACCACCTCCTCTCCGTCGGGGTCTG TGTGCGGTGCATCTTTCGGTTCTTTGGAGCCTTTAGTTATGCAGCACCATGCCTTTCTCT TACGGCATCAGTTCTGCATTCGTTTCTTGAAGAGCATGACGATTCCGCAAAAAGTGGGTC TTGTTCATGTTTGTCAAAAGATGAGGCGTACTGCTCTATTTGCTTTGGAGTGTTACTGCC CACCTGCTATCAAGATGATGGTGTAGAACCACTCCGTAGTGTTTCTCCTATCGATAATGT TACTTCAATTATATCTGAAGCAGTCCAGAGAGAGGGTCACCAAGTCGATGAGTTCTCCCT AGAAATTTCACTGCGTGCAGTTATAGCAGCTAATGATCGTGCCATTAGGTTATATATGAA AGAGAAATATGGCAGTGCAAATTGGTTCGATGAAAAAATATTTTCTCAACAGACAATGTC AGTGAAGGAGGCCTTGAGAATATTGCTAGTACCGTCAGTAGAAAAACAAATGAATGTGAA ACATGGTAATAATTCATTTCGAATTCGCTTAACTTATACTCATGATGAAGGTTCACAAAA GCTTCTAAGGCTTCTGCCAAATGACCGTGGTCGTAAAAGAAAAACAGAATCAAGAGATGG AAGCAGTAAAAGGGGCTCAACAGATGATGATAAACAAATATTAAGTGAATCAGATGCATT CATCAACAAGAACCTTGAAGGCATTCAAGATCAAGACTTCCGTAGTTTATTTCAATTGCC ACCTGAAAAGGTGTTAGAACCCTGCCATCTTGTGATATCTTGCCAACGGTCACCCATATA TATTGGTGGAAGATACTTGAAGCTTTCAAGGAATGTCAGCCAGTCATGTTGGATAATTGA TGATGAGAGAATGGGGGAAGCATCAGTTGAGGAGATAATTGGGGAGAATGTCCGTGCCAT CTGCAAAGGTGATGGCTATAAGTTCCATGCTGCTGGAAGAGAAGATATTGATGTTCGGAT GCTTGGATCTGGTCGTCCATTCTTAGTTGAAGTCTTGAATGTGCGATCTATTCCATCTGC TACTGAAGTTCAACAAATAGCAGATAAGATTAATGACTCTGAAAAGAAACATGTCAGGGT TAGAAATCTCAAGCTGGTAGGCAGTGAAATATGGACAATGATGCGGGAAGGAGAAGCAGA GAAGCAGAAGCAGTATGCTGCCCTCATATGGACGTCTCGCCCTCTGACGGATGATGACCT ACATAATATTTCTCTTATCAAAGATATGGAAATTGTACAAAAGACGCCAATAAGAGTCTT ACATCGTAGAAGTCCATTAGAGAGAAAACGGATTATACACTGGATGGAGATTGAAAAAAT TTCTGGCGGGTCAAACTATTACCTGTTGCATCTATGCACTCAAGCTGGGACGTACATAAA GGAGTTTGTGCACGGAGGTCTTGGACGCACACACCCAAGTGTTGGCGTCATGTTAAGCTG CAGAGCTGAGATACTGCAACTCGATGTCACTGACGTTAAGATGGACTTCCTGCAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)