Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2332 cluster # 2332       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2332#0 length = 876 sequences # 1  
consensus_2332#1 length = 838 sequences # 1  

consensusID : consensus_2332#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 876
fasta sequence
                              [CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGAGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAGCACCTTAAGCTTT]

[+] EMBL AK067826             [CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGAGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAGCACCTTAAGCTTT]


>consensus_2332#0 CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCC AGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGT GAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGA GGAGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTC CACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCAT CAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCAT CCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCG AGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGC CGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGA GAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGA GGAGAGGAGGGGCGAGAGAGAGAGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGA TAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTT TTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTT AATAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAA CAAGTTGACAAGCACGATCGCAGCACCTTAAGCTTT



consensusID : consensus_2332#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 838
fasta sequence
                              [GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGGAACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGGTACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCCACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA]

[-] EMBL AK064606             [GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGGAACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGGTACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCCACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA]


>consensus_2332#1 GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGG AACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGG TACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCC ACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCC TCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGG GTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTC GTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTC ACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAG GAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTT TGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCA CCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAAC CGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTC GGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTA GCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2332#0      ------------------------------------------------------------
consensus_2332#1      GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGG 60
                                                                                  

consensus_2332#0      ------------------------------------------------------------
consensus_2332#1      AACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGG 120
                                                                                  

consensus_2332#0      ------------------------------------------------------------
consensus_2332#1      TACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCC 180
                                                                                  

consensus_2332#0      --------CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCC 52
consensus_2332#1      ACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCC 240
                              ****************************************************

consensus_2332#0      TCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGG 112
consensus_2332#1      TCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGG 300
                      ************************************************************

consensus_2332#0      GTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTC 172
consensus_2332#1      GTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTC 360
                      ************************* **********************************

consensus_2332#0      GTGCTAGAGGAGGAGAA-----------------------------AGGTGGCCGCTGTC 203
consensus_2332#1      GTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTC 420
                      *****************                             **************

consensus_2332#0      ACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAG 263
consensus_2332#1      ACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAG 480
                      ************************************************************

consensus_2332#0      GAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTT 323
consensus_2332#1      GAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTT 540
                      ************************************************************

consensus_2332#0      TGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCA 383
consensus_2332#1      TGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCA 600
                      ************************************************************

consensus_2332#0      CCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAAC 443
consensus_2332#1      CCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAAC 660
                      ************************************************************

consensus_2332#0      CGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTC 503
consensus_2332#1      CGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTC 720
                      ************************************************************

consensus_2332#0      GGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTA 563
consensus_2332#1      GGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTA 780
                      ************************************************************

consensus_2332#0      GCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGA 623
consensus_2332#1      GCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA-- 838
                      **********************************************************  

consensus_2332#0      GAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGA 683
consensus_2332#1      ------------------------------------------------------------
                                                                                  

consensus_2332#0      TGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTG 743
consensus_2332#1      ------------------------------------------------------------
                                                                                  

consensus_2332#0      AAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTG 803
consensus_2332#1      ------------------------------------------------------------
                                                                                  

consensus_2332#0      TATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAG 863
consensus_2332#1      ------------------------------------------------------------
                                                                                  

consensus_2332#0      CACCTTAAGCTTT 876
consensus_2332#1      -------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)