These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 876 fasta sequence [CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGAGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAGCACCTTAAGCTTT] [+] EMBL AK067826 [CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGAGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAGCACCTTAAGCTTT] consensusID : consensus_2332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGGAACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGGTACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCCACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA] [-] EMBL AK064606 [GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGGAACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGGTACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCCACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCCTCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGGGTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTCGTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTCACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTTTGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2332#0 ------------------------------------------------------------ consensus_2332#1 GATCCGGTATTTATAGTTGAGGGATCACTAGTACAGAAAACCCTATAGGTGCCGGTTAGG 60 consensus_2332#0 ------------------------------------------------------------ consensus_2332#1 AACTGGCTCCATTGGTCGGCACCTTTGCCTCATTTTTATTGCTGCCGGTTCTAAAACCGG 120 consensus_2332#0 ------------------------------------------------------------ consensus_2332#1 TACCTATACTATTAAAAAAATAAAAAATTGATGGCGCCTACAGTGCCACCGGCCTTCTCC 180 consensus_2332#0 --------CACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCC 52 consensus_2332#1 ACCGCCGCCACCACCACCTCGCCTGGCCGGCCTCCACGCCACCACCTAGCCATGCCTGCC 240 **************************************************** consensus_2332#0 TCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGG 112 consensus_2332#1 TCCATGCCAGCGGCCGCCACCCAACACCGCGCTGGAGGAGGGGGGGCCCGGGGAGAGAGG 300 ************************************************************ consensus_2332#0 GTGTCGGTGAGATCCAGCAACCGCGCCGCAACCTCGCCGTGTCGGTCGCCACACCACGTC 172 consensus_2332#1 GTGTCGGTGAGATCCAGCAACCGCGGCGCAACCTCGCCGTGTCGGTCGCCACACCACGTC 360 ************************* ********************************** consensus_2332#0 GTGCTAGAGGAGGAGAA-----------------------------AGGTGGCCGCTGTC 203 consensus_2332#1 GTGCTAGAGGAGGAGAAGGGAAGCGGGGCGAGGTCCCTCGGGAGAAAGGTGGCCGCTGTC 420 ***************** ************** consensus_2332#0 ACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAG 263 consensus_2332#1 ACTGCCACCTCGCCACGCCTGCCTCGGCGCCGGCCTCCACCTCACCCGCGCTGCCACGAG 480 ************************************************************ consensus_2332#0 GAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTT 323 consensus_2332#1 GAGAGGAAGGCGAGAGGGGCGAGGCTCCTCTAACCATCAGCCGCCGTGCCGGCCAGCCTT 540 ************************************************************ consensus_2332#0 TGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCA 383 consensus_2332#1 TGCCACCACCGTTGTCGCCGCTACCTCGCCGCGCCATCCTCGGCGCCGGCCTCCACCTCA 600 ************************************************************ consensus_2332#0 CCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAAC 443 consensus_2332#1 CCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAAC 660 ************************************************************ consensus_2332#0 CGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTC 503 consensus_2332#1 CGCGCTGGCCAGCCTACTCCACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTC 720 ************************************************************ consensus_2332#0 GGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTA 563 consensus_2332#1 GGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGAGGAAGGCGAGAGGGGCGACTA 780 ************************************************************ consensus_2332#0 GCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAGA 623 consensus_2332#1 GCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGA-- 838 ********************************************************** consensus_2332#0 GAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGA 683 consensus_2332#1 ------------------------------------------------------------ consensus_2332#0 TGGCGCTGTGGGTGGTCAAAAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTG 743 consensus_2332#1 ------------------------------------------------------------ consensus_2332#0 AAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAATAGAACCGATACCTATATTTG 803 consensus_2332#1 ------------------------------------------------------------ consensus_2332#0 TATTACAGGTGTCAGTTCTGTTGGCAACTTTTTGTAACAAGTTGACAAGCACGATCGCAG 863 consensus_2332#1 ------------------------------------------------------------ consensus_2332#0 CACCTTAAGCTTT 876 consensus_2332#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||