These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2406 fasta sequence [CGCCTCCGCCTCCTCCCCCTCCATCGCCGGCGGCCGCTTCTAGCCGGAGAGAAGAAGGCATGCCGCGGACGAGCGTGGTCGAGAGCCCCGGCTGCCCGCCGCTCCGGGCCCTCACCACCGACATCCTCGGCCTCATCAAAGTCGTGGAGGCCCGCACGAAGCCGGCGGGCGTCGCCAAGGTCGTCGAGACGTGGGGCGCGCCCGACGCGCCCCGCGCCGTCCTCGCCGCCTCGCTCGCCGACCGCGCCGTCGACCCCGTTTTGGCCGTGGCGCGGAAGAACGGCGTGGTTGAGCTGCTGAATCCACTGAATGGGGAGACTCTCGCAGGCGTCAACGCTGCTGCTGGGCGGGCGGCACCGGCTGATAGTTCTGCAGAAGAGGACCCCTTAGCCACGCTGCATCTCTTCAGAAGACATGCGCTGGACTCATCCATGTTAGGCACATTTCTTGCTTGTACAGAGAAGGGGAAAGCATATGTCAAGTCTGTCGCAAAGGAAAATGCATCCTCGGACATGGCTGTTGGGCCATCAAGCTCATGGGATGTGAGCAATTCGGGTACAGTGCAATTTTCTTCAGTGGATGCTGGTGAAAGCTACGCGATGTTCGGAGGGAAAGGAATAGAAGTCAATTTGTGGGATATCACATCTTGTAGTAAGATATGGTCTGCCAAGTCTCCTCGAGGCAACAGTCTTCAGATATTCACTGCACCTTGGTTCACTGCTGGAACTTTTTTGTGCAAGGATGACCATCGTAAAATTGTAGCCTGCACAAATAATCATCAGGTTCGCTTATATGACACTGCTTCCCAAAGAAGGCCTGTAATTTCAGTTGATTTTAGGGAGTCACCAATCAAGGCAGTTGCTGAGGACCCAAATGGACATGCTGTCTACATTGGTACAGGAAGAGGGGACCTTGCTTCCTTTGACATGAGAACAGGTATTATATGATAGTAGCTGGTGTGTGATAATTCTTGCTGATGGCACTTGGAAGTCAAAATACATTCTGAATTATATTTTCAGAGTTGTAGCTTAGTTTGAATTTTGTATCTAGTATACTATAGTTCAAATAAAAATCTCTTTTCATTTTCGTACTCTAAAGTTCACTCTGGCATGTGTATTTCATTGTACTATTTTTTGGCTACCATGCTCTGATGCTTACATAGGTGGTACAACATTGGTTGTTTATTTATTTTCCTGATCGATTCATAGTTAGTTCATCATGTGCTATATGGATACATTTAACTGCCTGGAGAAGTTTTATTTAAATTTAACTTAATATTCTGCAATGAGCTTATGCATCATGCACTTTTTTGGAGGAACAGAGAAAACAAATATGCATCTCTGTGGGTTTCCAGGAACATCAACTGTGAATCAAAACCTTCGGTTGAATATTCTTGCTAAAAATGCACCTCCTCAATTGATTCCTGTGTACATCCCTCAACTATAGCATGAATAAAGTTGTGCTGTTATGGTTCTTGTACTAACCTGAGCAAATATGCCAACAAATTTTCAGGGGATTTGAGACTACTAAACTATCTGTGAGTGATATTGAAATACCAGATAAATTGGTTTCAATTCAGGCGTTAGAAAGATATCTTGTTCATGTCCCTTATCAGATATCAAAAGATGTTTGATTATTGTATGCTTACAACATTCTAGATTATATTCTATGTAAATTCCTTACACTTTGCAATCGGTATTCACTTTTTAGTTCTTTTTAATGTATCTATTTACAGAATTAACTTTAGCTTGCACCCTTTTCCCAGGAAAACTACTTGGTTGCTTTGCTGGTAAATGCAGTGGAAGTATTAGATCTATAGTTAGACATCCAGAGCTACCTTTGATAGCATCTTGTGGACTGGACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGCTCTCTGCGGTCTTCCTCAAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGAGACTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGAACGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTCTGAAATGCACACCTCAAAGAGAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATTAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGCGT] [+] EMBL AK073959 [CGCCTCCGCCTCCTCCCCCTCCATCGCCGGCGGCCGCTTCTAGCCGGAGAGAAGAAGGCATGCCGCGGACGAGCGTGGTCGAGAGCCCCGGCTGCCCGCCGCTCCGGGCCCTCACCACCGACATCCTCGGCCTCATCAAAGTCGTGGAGGCCCGCACGAAGCCGGCGGGCGTCGCCAAGGTCGTCGAGACGTGGGGCGCGCCCGACGCGCCCCGCGCCGTCCTCGCCGCCTCGCTCGCCGACCGCGCCGTCGACCCCGTTTTGGCCGTGGCGCGGAAGAACGGCGTGGTTGAGCTGCTGAATCCACTGAATGGGGAGACTCTCGCAGGCGTCAACGCTGCTGCTGGGCGGGCGGCACCGGCTGATAGTTCTGCAGAAGAGGACCCCTTAGCCACGCTGCATCTCTTCAGAAGACATGCGCTGGACTCATCCATGTTAGGCACATTTCTTGCTTGTACAGAGAAGGGGAAAGCATATGTCAAGTCTGTCGCAAAGGAAAATGCATCCTCGGACATGGCTGTTGGGCCATCAAGCTCATGGGATGTGAGCAATTCGGGTACAGTGCAATTTTCTTCAGTGGATGCTGGTGAAAGCTACGCGATGTTCGGAGGGAAAGGAATAGAAGTCAATTTGTGGGATATCACATCTTGTAGTAAGATATGGTCTGCCAAGTCTCCTCGAGGCAACAGTCTTCAGATATTCACTGCACCTTGGTTCACTGCTGGAACTTTTTTGTGCAAGGATGACCATCGTAAAATTGTAGCCTGCACAAATAATCATCAGGTTCGCTTATATGACACTGCTTCCCAAAGAAGGCCTGTAATTTCAGTTGATTTTAGGGAGTCACCAATCAAGGCAGTTGCTGAGGACCCAAATGGACATGCTGTCTACATTGGTACAGGAAGAGGGGACCTTGCTTCCTTTGACATGAGAACAGGTATTATATGATAGTAGCTGGTGTGTGATAATTCTTGCTGATGGCACTTGGAAGTCAAAATACATTCTGAATTATATTTTCAGAGTTGTAGCTTAGTTTGAATTTTGTATCTAGTATACTATAGTTCAAATAAAAATCTCTTTTCATTTTCGTACTCTAAAGTTCACTCTGGCATGTGTATTTCATTGTACTATTTTTTGGCTACCATGCTCTGATGCTTACATAGGTGGTACAACATTGGTTGTTTATTTATTTTCCTGATCGATTCATAGTTAGTTCATCATGTGCTATATGGATACATTTAACTGCCTGGAGAAGTTTTATTTAAATTTAACTTAATATTCTGCAATGAGCTTATGCATCATGCACTTTTTTGGAGGAACAGAGAAAACAAATATGCATCTCTGTGGGTTTCCAGGAACATCAACTGTGAATCAAAACCTTCGGTTGAATATTCTTGCTAAAAATGCACCTCCTCAATTGATTCCTGTGTACATCCCTCAACTATAGCATGAATAAAGTTGTGCTGTTATGGTTCTTGTACTAACCTGAGCAAATATGCCAACAAATTTTCAGGGGATTTGAGACTACTAAACTATCTGTGAGTGATATTGAAATACCAGATAAATTGGTTTCAATTCAGGCGTTAGAAAGATATCTTGTTCATGTCCCTTATCAGATATCAAAAGATGTTTGATTATTGTATGCTTACAACATTCTAGATTATATTCTATGTAAATTCCTTACACTTTGCAATCGGTATTCACTTTTTAGTTCTTTTTAATGTATCTATTTACAGAATTAACTTTAGCTTGCACCCTTTTCCCAGGAAAACTACTTGGTTGCTTTGCTGGTAAATGCAGTGGAAGTATTAGATCTATAGTTAGACATCCAGAGCTACCTTTGATAGCATCTTGTGGACTGGACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGCTCTCTGCGGTCTTCCTCAAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGAGACTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGAACGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTCTGAAATGCACACCTCAAAGAGAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATTAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGCGT] consensusID : consensus_2339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [GACACCGGGGATGCGTTGGTGTTAAATGCAGTGGACAGATTGGGATTGATAGTTAGCCGTCAACTATTCCCTGTGATAGCCTTTTGTGAGCTGGCCAGGTCCTTCGGCATCTGGGCCGCAAATACAAGGATGCTGCTCTGGGCGTTCTTCCTCAAGCAGCACATGACAGCTGTGGTTATTGATTCATATTTGTCCGCTGAGGAACTCGAGGAGCCTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGACCGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTTTGAAATGCACACCTCAAAGAGAAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATCAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGTGTATTATCACCCCTTTTTTGTGTGCTAAAAAAAAAAAAAA] [-] EMBL CA762057 [GACACCGGGGATGCGTTGGTGTTAAATGCAGTGGACAGATTGGGATTGATAGTTAGCCGTCAACTATTCCCTGTGATAGCCTTTTGTGAGCTGGCCAGGTCCTTCGGCATCTGGGCCGCAAATACAAGGATGCTGCTCTGGGCGTTCTTCCTCAAGCAGCACATGACAGCTGTGGTTATTGATTCATATTTGTCCGCTGAGGAACTCGAGGAGCCTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGACCGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTTTGAAATGCACACCTCAAAGAGAAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATCAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGTGTATTATCACCCCTTTTTTGTGTGCTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2339#0 CGCCTCCGCCTCCTCCCCCTCCATCGCCGGCGGCCGCTTCTAGCCGGAGAGAAGAAGGCA 60 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 TGCCGCGGACGAGCGTGGTCGAGAGCCCCGGCTGCCCGCCGCTCCGGGCCCTCACCACCG 120 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 ACATCCTCGGCCTCATCAAAGTCGTGGAGGCCCGCACGAAGCCGGCGGGCGTCGCCAAGG 180 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 TCGTCGAGACGTGGGGCGCGCCCGACGCGCCCCGCGCCGTCCTCGCCGCCTCGCTCGCCG 240 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 ACCGCGCCGTCGACCCCGTTTTGGCCGTGGCGCGGAAGAACGGCGTGGTTGAGCTGCTGA 300 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 ATCCACTGAATGGGGAGACTCTCGCAGGCGTCAACGCTGCTGCTGGGCGGGCGGCACCGG 360 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CTGATAGTTCTGCAGAAGAGGACCCCTTAGCCACGCTGCATCTCTTCAGAAGACATGCGC 420 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 TGGACTCATCCATGTTAGGCACATTTCTTGCTTGTACAGAGAAGGGGAAAGCATATGTCA 480 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 AGTCTGTCGCAAAGGAAAATGCATCCTCGGACATGGCTGTTGGGCCATCAAGCTCATGGG 540 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 ATGTGAGCAATTCGGGTACAGTGCAATTTTCTTCAGTGGATGCTGGTGAAAGCTACGCGA 600 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 TGTTCGGAGGGAAAGGAATAGAAGTCAATTTGTGGGATATCACATCTTGTAGTAAGATAT 660 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 GGTCTGCCAAGTCTCCTCGAGGCAACAGTCTTCAGATATTCACTGCACCTTGGTTCACTG 720 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CTGGAACTTTTTTGTGCAAGGATGACCATCGTAAAATTGTAGCCTGCACAAATAATCATC 780 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 AGGTTCGCTTATATGACACTGCTTCCCAAAGAAGGCCTGTAATTTCAGTTGATTTTAGGG 840 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 AGTCACCAATCAAGGCAGTTGCTGAGGACCCAAATGGACATGCTGTCTACATTGGTACAG 900 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 GAAGAGGGGACCTTGCTTCCTTTGACATGAGAACAGGTATTATATGATAGTAGCTGGTGT 960 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 GTGATAATTCTTGCTGATGGCACTTGGAAGTCAAAATACATTCTGAATTATATTTTCAGA 1020 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 GTTGTAGCTTAGTTTGAATTTTGTATCTAGTATACTATAGTTCAAATAAAAATCTCTTTT 1080 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CATTTTCGTACTCTAAAGTTCACTCTGGCATGTGTATTTCATTGTACTATTTTTTGGCTA 1140 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CCATGCTCTGATGCTTACATAGGTGGTACAACATTGGTTGTTTATTTATTTTCCTGATCG 1200 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 ATTCATAGTTAGTTCATCATGTGCTATATGGATACATTTAACTGCCTGGAGAAGTTTTAT 1260 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 TTAAATTTAACTTAATATTCTGCAATGAGCTTATGCATCATGCACTTTTTTGGAGGAACA 1320 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 GAGAAAACAAATATGCATCTCTGTGGGTTTCCAGGAACATCAACTGTGAATCAAAACCTT 1380 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CGGTTGAATATTCTTGCTAAAAATGCACCTCCTCAATTGATTCCTGTGTACATCCCTCAA 1440 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CTATAGCATGAATAAAGTTGTGCTGTTATGGTTCTTGTACTAACCTGAGCAAATATGCCA 1500 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 ACAAATTTTCAGGGGATTTGAGACTACTAAACTATCTGTGAGTGATATTGAAATACCAGA 1560 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 TAAATTGGTTTCAATTCAGGCGTTAGAAAGATATCTTGTTCATGTCCCTTATCAGATATC 1620 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 AAAAGATGTTTGATTATTGTATGCTTACAACATTCTAGATTATATTCTATGTAAATTCCT 1680 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 TACACTTTGCAATCGGTATTCACTTTTTAGTTCTTTTTAATGTATCTATTTACAGAATTA 1740 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 ACTTTAGCTTGCACCCTTTTCCCAGGAAAACTACTTGGTTGCTTTGCTGGTAAATGCAGT 1800 consensus_2339#1 ----------------------------GACACCGGGGATGCGTTGGTGTTAAATGCAGT 32 ** * ** *** *** ** ********** consensus_2339#0 GGAAGTATTAG-ATCTATAGTTAGACATCCAGAGCTACCTTTGATAGCATCTTGTGGACT 1859 consensus_2339#1 GGACAGATTGGGATTGATAGTTAGCCGTCAACTATTCCCTGTGATAGCCTTTTGTGAGCT 92 *** *** * ** ******** * ** * * *** ******* * ***** ** consensus_2339#0 GGACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGCTCTCTGCGGTCTTCCT 1919 consensus_2339#1 GGCCAGGTCCTTCGGCATCTGGGCCGCAAATACAAGGATGCTGCTCTGGGCGTTCTTCCT 152 ** *** * *** ********* * *********** ******** *** ******* consensus_2339#0 CAAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGA 1979 consensus_2339#1 CAAGCAGCACATGACAGCTGTGGTTATTGATTCATATTTGTCCGCTGAGGAACTCGAGGA 212 ********** *********************** **** *** **** *********** consensus_2339#0 GACTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAA 2039 consensus_2339#1 GCCTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAA 272 * ********************************************************** consensus_2339#0 GAAGAATAGAACGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAG 2099 consensus_2339#1 GAAGAATAGACCGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAG 332 ********** ************************************************* consensus_2339#0 TGATTCTGAAATGCACACCTCAAAGAGAAAAAAA-TCTGGTGAAAAAAGCAAAGGAATGA 2158 consensus_2339#1 TGATTTTGAAATGCACACCTCAAAGAGAAAAAAAATCTGGTGAAAAAAGCAAAGGAATGA 392 ***** **************************** ************************* consensus_2339#0 AAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGT 2218 consensus_2339#1 AAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGT 452 ************************************************************ consensus_2339#0 TGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAA 2278 consensus_2339#1 TGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAA 512 ************************************************************ consensus_2339#0 TATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATT 2338 consensus_2339#1 TATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATT 572 ************************************************************ consensus_2339#0 CTTCAAATACTTGCCGGGCCAATTAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGA 2398 consensus_2339#1 CTTCAAATACTTGCCGGGCCAATCAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGA 632 *********************** ************************************ consensus_2339#0 AATGGCGT-------------------------------------- 2406 consensus_2339#1 AATGGTGTATTATCACCCCTTTTTTGTGTGCTAAAAAAAAAAAAAA 678 ***** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||