These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1344 fasta sequence [ACCACGATCTCTCTTCTGCTTGGAATTCTCTATCCTATTTTTCATCTCATATTCTAACCATTGATTATGCCATGATTGGATCTTGGCACAGTGCTCTGCATGTGTTCTTGTGTTAATCAGCTGCCCCTAATCCCCTAGGAGACCAATCTACTGCTGCTTAGCTCCTGATACAAATTTGCACATTGCCCGGTGAAAATTCAGCAACTGAGCAAGCCAACAAGAGCCTGGGTTTCTGAACTCTGACTAGCAGTTTCATCAGATTGGTTTGAGCTTGGGAGAGATCGATGGGGTGCGTGTCGTCCAAGATCCTGAGCAAATCAGGGAGCTTCCAGGAGAAGGTGGTGAGCCATGGATTCAAGGGGAGCAACCTGATCGAGGAGATCATCCTGTCCACCCCCAAGAAGAGCAACGGCGATCAGTTCTTGGCCCTCCTCCGCACGTCCACCTCGTCGGCGTCGGCGGCGGCGAGCAGGGCCAAGGACGCCGCCGATCAGAGCACCACGGCGGCGGCGGTGGCCGCCGAGGAGTTTGTCAAGATCGAGACGATCAACGTGTCCGAGCTGCTCGCCGGGCTGGAGGAGGAAGAGGAGGAAGAAGAACGCGACGACGGCGAGAGGTGTTCGGCTCAGGCGTGCGTGCTCGATGGCGCGGTGGCGACGCCGGCGAGGGCGACGAGCTTTCGCACCGTGGAGGAGTTCGACGCGCTGGTGACGCGGAGCGGCTCGTCGGAGGTGGCGGAGGCAGCCTCCTCCGCCGATCAAGACGCGACGGGCGCCAAACCGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACAAGAGGCGGGCGAGGGCGAGGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGCAGCCTGCGCGACTGGCTCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACCCCCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCGCCGCCGCCGCAAGAACGTGGAGGAGTACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCTGGTCGCGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAGATCCTGGAAGCCATGGGAGCGGCGGCGGAGGAGGAGGAGGAGGAGGAAGCGACGGCGACGGCGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCGGTGATGGTGGTGCAGGAGTAGGCGACGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAAACCCTGTGCTTGCAAAATGTAAATATGAAT] [+] EMBL AK107539 [ACCACGATCTCTCTTCTGCTTGGAATTCTCTATCCTATTTTTCATCTCATATTCTAACCATTGATTATGCCATGATTGGATCTTGGCACAGTGCTCTGCATGTGTTCTTGTGTTAATCAGCTGCCCCTAATCCCCTAGGAGACCAATCTACTGCTGCTTAGCTCCTGATACAAATTTGCACATTGCCCGGTGAAAATTCAGCAACTGAGCAAGCCAACAAGAGCCTGGGTTTCTGAACTCTGACTAGCAGTTTCATCAGATTGGTTTGAGCTTGGGAGAGATCGATGGGGTGCGTGTCGTCCAAGATCCTGAGCAAATCAGGGAGCTTCCAGGAGAAGGTGGTGAGCCATGGATTCAAGGGGAGCAACCTGATCGAGGAGATCATCCTGTCCACCCCCAAGAAGAGCAACGGCGATCAGTTCTTGGCCCTCCTCCGCACGTCCACCTCGTCGGCGTCGGCGGCGGCGAGCAGGGCCAAGGACGCCGCCGATCAGAGCACCACGGCGGCGGCGGTGGCCGCCGAGGAGTTTGTCAAGATCGAGACGATCAACGTGTCCGAGCTGCTCGCCGGGCTGGAGGAGGAAGAGGAGGAAGAAGAACGCGACGACGGCGAGAGGTGTTCGGCTCAGGCGTGCGTGCTCGATGGCGCGGTGGCGACGCCGGCGAGGGCGACGAGCTTTCGCACCGTGGAGGAGTTCGACGCGCTGGTGACGCGGAGCGGCTCGTCGGAGGTGGCGGAGGCAGCCTCCTCCGCCGATCAAGACGCGACGGGCGCCAAACCGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACAAGAGGCGGGCGAGGGCGAGGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGCAGCCTGCGCGACTGGCTCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACCCCCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCGCCGCCGCCGCAAGAACGTGGAGGAGTACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCTGGTCGCGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAGATCCTGGAAGCCATGGGAGCGGCGGCGGAGGAGGAGGAGGAGGAGGAAGCGACGGCGACGGCGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCGGTGATGGTGGTGCAGGAGTAGGCGACGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAAACCCTGTGCTTGCAAAATGTAAATATGAAT] consensusID : consensus_2346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [TCTTTCTCTCTCCTTTCCTTCACCGGGTGGCACAGTCGGGAGGACAGGAGGAGACAGGGAGGCCGAGGGAGGCGGAGAGGCCGGCGAGCCGCTCCTCTCCCGCCGGCCGGCGCGCGCCGCTGCCTCGCCTCCTCTCCCGCCGACTGGTGCGCGCCGCTCTCTCCTCTCCCGGTGGCCGGCGCGCGCTGCTGCCTCGCTCTCTCTCCCACCGGTCGGCGCGCGGGGATCCCGGCGAGCCGCCACGACCTTGCGCACGCCGCGGGGATCCAGTCACGCAGGCTGCCAGACTTGGAGAAGTCGAAGGCCGGTGGCAGTGGCACCTTCAGCTCGCCGAGCTGCCTCGCCCTCGCCTCTCATCGGTGAAATAGATTAGTAGCAGAATTAGTGTGTTGGCACTGAAAAGCGACTGATTCCATTATACGGATGATGAATTGCATAGCATTGGTGAAACAAATCAGTAGTAGCGGAATTAGTGGTTTTGATACTGAAAAGCGATGGATTGAATGCTGCAAATGATGATGAATGTG] [+] EMBL AK064703 [TCTTTCTCTCTCCTTTCCTTCACCGGGTGGCACAGTCGGGAGGACAGGAGGAGACAGGGAGGCCGAGGGAGGCGGAGAGGCCGGCGAGCCGCTCCTCTCCCGCCGGCCGGCGCGCGCCGCTGCCTCGCCTCCTCTCCCGCCGACTGGTGCGCGCCGCTCTCTCCTCTCCCGGTGGCCGGCGCGCGCTGCTGCCTCGCTCTCTCTCCCACCGGTCGGCGCGCGGGGATCCCGGCGAGCCGCCACGACCTTGCGCACGCCGCGGGGATCCAGTCACGCAGGCTGCCAGACTTGGAGAAGTCGAAGGCCGGTGGCAGTGGCACCTTCAGCTCGCCGAGCTGCCTCGCCCTCGCCTCTCATCGGTGAAATAGATTAGTAGCAGAATTAGTGTGTTGGCACTGAAAAGCGACTGATTCCATTATACGGATGATGAATTGCATAGCATTGGTGAAACAAATCAGTAGTAGCGGAATTAGTGGTTTTGATACTGAAAAGCGATGGATTGAATGCTGCAAATGATGATGAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2346#0 ACCACGATCTCTCTTCTGCTTGGAATTCTCTATCCTATTTTTCATCTCATATTCTAACCA 60 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 TTGATTATGCCATGATTGGATCTTGGCACAGTGCTCTGCATGTGTTCTTGTGTTAATCAG 120 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 CTGCCCCTAATCCCCTAGGAGACCAATCTACTGCTGCTTAGCTCCTGATACAAATTTGCA 180 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 CATTGCCCGGTGAAAATTCAGCAACTGAGCAAGCCAACAAGAGCCTGGGTTTCTGAACTC 240 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 TGACTAGCAGTTTCATCAGATTGGTTTGAGCTTGGGAGAGATCGATGGGGTGCGTGTCGT 300 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 CCAAGATCCTGAGCAAATCAGGGAGCTTCCAGGAGAAGGTGGTGAGCCATGGATTCAAGG 360 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 GGAGCAACCTGATCGAGGAGATCATCCTGTCCACCCCCAAGAAGAGCAACGGCGATCAGT 420 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 TCTTGGCCCTCCTCCGCACGTCCACCTCGTCGGCGTCGGCGGCGGCGAGCAGGGCCAAGG 480 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 ACGCCGCCGATCAGAGCACCACGGCGGCGGCGGTGGCCGCCGAGGAGTTTGTCAAGATCG 540 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 AGACGATCAACGTGTCCGAGCTGCTCGCCGGGCTGGAGGAGGAAGAGGAGGAAGAAGAAC 600 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 GCGACGACGGCGAGAGGTGTTCGGCTCAGGCGTGCGTGCTCGATGGCGCGGTGGCGACGC 660 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 CGGCGAGGGCGACGAGCTTTCGCACCGTGGAGGAGTTCGACGCGCTGGTGACGCGGAGCG 720 consensus_2346#1 ------------------------------------------------------------ consensus_2346#0 GCTCGTCGGAGGTGGCGGAGGCAGCCTCCTCCGCCGATCAAGACGCGACGGGCGCCAAAC 780 consensus_2346#1 -----------------------TCTTTCTCTCTCCTTTCCTTCAC--CGGGTGGCACA- 34 * * *** * * * * **** * ** * consensus_2346#0 CGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACA-AGAGGCGGGCGAGGGCG 839 consensus_2346#1 -GTCGGGAGGACAGGAGGA-GACAGGGAGGCCGAGGGAGGCGGAGAGGCCGGCGAGCCGC 92 ***** * ****** * ** * **** ** * ****** ****** consensus_2346#0 AGGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGC 899 consensus_2346#1 TCCTCTCCCGCCGGCCGGCGCGCGCCGCTGCCTC--GCCTCCTCTCCCGCCGACTGGTGC 150 * ** ** * * * *** ***** * ** * * * ** * * ** consensus_2346#0 AGCCTGCGCGACTGGCTCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACC 959 consensus_2346#1 GCGCCGCTCTCTCCTCTCCCGGTGGCCGGCGCGCGCTGCTGCCTCGCTCTCTCTCCCACC 210 * ** * **** ** *** * * ** ** * ** **** consensus_2346#0 CCCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCGCCGCCGCCGCAAGAACGTGGAGGA 1019 consensus_2346#1 GGTCGGCGCGCGGGGATCCCGGCGA-------GCCGCCACGACCTTGCGCACGCCGCGGG 263 * ** * ** * * ** ****** * ** * *** * ** consensus_2346#0 GTACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCTGGTC 1079 consensus_2346#1 G-ATCCAGTCACGCAGGCT-GCCAGACTTGGAGAAGTCGAAGGCCGGTGGC-AGTGGCAC 320 * * * **** *** *** * * ** * * * * * * ** * * consensus_2346#0 GCGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAG 1139 consensus_2346#1 CTTCAGCTCGC-CGAGCTGCCTCGCCCTCGCCTCTCATCGGTGAAATAGATTAGTAGCAG 379 *** *** * *** ** * * ** ** * * * ** ** consensus_2346#0 ATCCTGGAAGCCATGG--GAGCGGCGGCGGAGG--AGGAGGAGGAGGAGGAAGCG-ACGG 1194 consensus_2346#1 AATTAGTGTGTTGGCACTGAAAAGCGACTGATTCCATTATACGGATGATGAATTGCATAG 439 * * * ** *** * ** * * *** ** *** * * * consensus_2346#0 CGACGGCGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCGGTGATGGTGGTGCAGGAGT 1254 consensus_2346#1 CATTGGTGA-AACAAATCAGTAGTAGCGGAATTA-------GTGGTTTTGATACTGAA-- 489 * ** ** * * * * ** ** * * *** * ** * * * * consensus_2346#0 AGGCGACGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAA 1314 consensus_2346#1 AAGCGATGGATTGAAT-GCTGCAAATGATGATGAATGTG--------------------- 527 * **** ** ** * * * * **** consensus_2346#0 ACCCTGTGCTTGCAAAATGTAAATATGAAT 1344 consensus_2346#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||