cluster # 2346

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Oryza sativa
cluster # 2346 cluster # 2346 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2346#0 length = 1344 sequences # 1

consensus_2346#1 length = 527 sequences # 1

consensusID : consensus_2346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1344
fasta sequence

                              [ACCACGATCTCTCTTCTGCTTGGAATTCTCTATCCTATTTTTCATCTCATATTCTAACCATTGATTATGCCATGATTGGATCTTGGCACAGTGCTCTGCATGTGTTCTTGTGTTAATCAGCTGCCCCTAATCCCCTAGGAGACCAATCTACTGCTGCTTAGCTCCTGATACAAATTTGCACATTGCCCGGTGAAAATTCAGCAACTGAGCAAGCCAACAAGAGCCTGGGTTTCTGAACTCTGACTAGCAGTTTCATCAGATTGGTTTGAGCTTGGGAGAGATCGATGGGGTGCGTGTCGTCCAAGATCCTGAGCAAATCAGGGAGCTTCCAGGAGAAGGTGGTGAGCCATGGATTCAAGGGGAGCAACCTGATCGAGGAGATCATCCTGTCCACCCCCAAGAAGAGCAACGGCGATCAGTTCTTGGCCCTCCTCCGCACGTCCACCTCGTCGGCGTCGGCGGCGGCGAGCAGGGCCAAGGACGCCGCCGATCAGAGCACCACGGCGGCGGCGGTGGCCGCCGAGGAGTTTGTCAAGATCGAGACGATCAACGTGTCCGAGCTGCTCGCCGGGCTGGAGGAGGAAGAGGAGGAAGAAGAACGCGACGACGGCGAGAGGTGTTCGGCTCAGGCGTGCGTGCTCGATGGCGCGGTGGCGACGCCGGCGAGGGCGACGAGCTTTCGCACCGTGGAGGAGTTCGACGCGCTGGTGACGCGGAGCGGCTCGTCGGAGGTGGCGGAGGCAGCCTCCTCCGCCGATCAAGACGCGACGGGCGCCAAACCGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACAAGAGGCGGGCGAGGGCGAGGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGCAGCCTGCGCGACTGGCTCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACCCCCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCGCCGCCGCCGCAAGAACGTGGAGGAGTACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCTGGTCGCGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAGATCCTGGAAGCCATGGGAGCGGCGGCGGAGGAGGAGGAGGAGGAGGAAGCGACGGCGACGGCGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCGGTGATGGTGGTGCAGGAGTAGGCGACGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAAACCCTGTGCTTGCAAAATGTAAATATGAAT]

[+] EMBL AK107539             [ACCACGATCTCTCTTCTGCTTGGAATTCTCTATCCTATTTTTCATCTCATATTCTAACCATTGATTATGCCATGATTGGATCTTGGCACAGTGCTCTGCATGTGTTCTTGTGTTAATCAGCTGCCCCTAATCCCCTAGGAGACCAATCTACTGCTGCTTAGCTCCTGATACAAATTTGCACATTGCCCGGTGAAAATTCAGCAACTGAGCAAGCCAACAAGAGCCTGGGTTTCTGAACTCTGACTAGCAGTTTCATCAGATTGGTTTGAGCTTGGGAGAGATCGATGGGGTGCGTGTCGTCCAAGATCCTGAGCAAATCAGGGAGCTTCCAGGAGAAGGTGGTGAGCCATGGATTCAAGGGGAGCAACCTGATCGAGGAGATCATCCTGTCCACCCCCAAGAAGAGCAACGGCGATCAGTTCTTGGCCCTCCTCCGCACGTCCACCTCGTCGGCGTCGGCGGCGGCGAGCAGGGCCAAGGACGCCGCCGATCAGAGCACCACGGCGGCGGCGGTGGCCGCCGAGGAGTTTGTCAAGATCGAGACGATCAACGTGTCCGAGCTGCTCGCCGGGCTGGAGGAGGAAGAGGAGGAAGAAGAACGCGACGACGGCGAGAGGTGTTCGGCTCAGGCGTGCGTGCTCGATGGCGCGGTGGCGACGCCGGCGAGGGCGACGAGCTTTCGCACCGTGGAGGAGTTCGACGCGCTGGTGACGCGGAGCGGCTCGTCGGAGGTGGCGGAGGCAGCCTCCTCCGCCGATCAAGACGCGACGGGCGCCAAACCGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACAAGAGGCGGGCGAGGGCGAGGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGCAGCCTGCGCGACTGGCTCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACCCCCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCGCCGCCGCCGCAAGAACGTGGAGGAGTACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCTGGTCGCGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAGATCCTGGAAGCCATGGGAGCGGCGGCGGAGGAGGAGGAGGAGGAGGAAGCGACGGCGACGGCGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCGGTGATGGTGGTGCAGGAGTAGGCGACGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAAACCCTGTGCTTGCAAAATGTAAATATGAAT]




>consensus_2346#0
ACCACGATCTCTCTTCTGCTTGGAATTCTCTATCCTATTTTTCATCTCATATTCTAACCA
TTGATTATGCCATGATTGGATCTTGGCACAGTGCTCTGCATGTGTTCTTGTGTTAATCAG
CTGCCCCTAATCCCCTAGGAGACCAATCTACTGCTGCTTAGCTCCTGATACAAATTTGCA
CATTGCCCGGTGAAAATTCAGCAACTGAGCAAGCCAACAAGAGCCTGGGTTTCTGAACTC
TGACTAGCAGTTTCATCAGATTGGTTTGAGCTTGGGAGAGATCGATGGGGTGCGTGTCGT
CCAAGATCCTGAGCAAATCAGGGAGCTTCCAGGAGAAGGTGGTGAGCCATGGATTCAAGG
GGAGCAACCTGATCGAGGAGATCATCCTGTCCACCCCCAAGAAGAGCAACGGCGATCAGT
TCTTGGCCCTCCTCCGCACGTCCACCTCGTCGGCGTCGGCGGCGGCGAGCAGGGCCAAGG
ACGCCGCCGATCAGAGCACCACGGCGGCGGCGGTGGCCGCCGAGGAGTTTGTCAAGATCG
AGACGATCAACGTGTCCGAGCTGCTCGCCGGGCTGGAGGAGGAAGAGGAGGAAGAAGAAC
GCGACGACGGCGAGAGGTGTTCGGCTCAGGCGTGCGTGCTCGATGGCGCGGTGGCGACGC
CGGCGAGGGCGACGAGCTTTCGCACCGTGGAGGAGTTCGACGCGCTGGTGACGCGGAGCG
GCTCGTCGGAGGTGGCGGAGGCAGCCTCCTCCGCCGATCAAGACGCGACGGGCGCCAAAC
CGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACAAGAGGCGGGCGAGGGCGA
GGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGCA
GCCTGCGCGACTGGCTCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACCC
CCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCGCCGCCGCCGCAAGAACGTGGAGGAG
TACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCTGGTCG
CGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAGA
TCCTGGAAGCCATGGGAGCGGCGGCGGAGGAGGAGGAGGAGGAGGAAGCGACGGCGACGG
CGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCGGTGATGGTGGTGCAGGAGTAGGCGA
CGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAAACCCTG
TGCTTGCAAAATGTAAATATGAAT

consensusID : consensus_2346#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TCTTTCTCTCTCCTTTCCTTCACCGGGTGGCACAGTCGGGAGGACAGGAGGAGACAGGGAGGCCGAGGGAGGCGGAGAGGCCGGCGAGCCGCTCCTCTCCCGCCGGCCGGCGCGCGCCGCTGCCTCGCCTCCTCTCCCGCCGACTGGTGCGCGCCGCTCTCTCCTCTCCCGGTGGCCGGCGCGCGCTGCTGCCTCGCTCTCTCTCCCACCGGTCGGCGCGCGGGGATCCCGGCGAGCCGCCACGACCTTGCGCACGCCGCGGGGATCCAGTCACGCAGGCTGCCAGACTTGGAGAAGTCGAAGGCCGGTGGCAGTGGCACCTTCAGCTCGCCGAGCTGCCTCGCCCTCGCCTCTCATCGGTGAAATAGATTAGTAGCAGAATTAGTGTGTTGGCACTGAAAAGCGACTGATTCCATTATACGGATGATGAATTGCATAGCATTGGTGAAACAAATCAGTAGTAGCGGAATTAGTGGTTTTGATACTGAAAAGCGATGGATTGAATGCTGCAAATGATGATGAATGTG]

[+] EMBL AK064703             [TCTTTCTCTCTCCTTTCCTTCACCGGGTGGCACAGTCGGGAGGACAGGAGGAGACAGGGAGGCCGAGGGAGGCGGAGAGGCCGGCGAGCCGCTCCTCTCCCGCCGGCCGGCGCGCGCCGCTGCCTCGCCTCCTCTCCCGCCGACTGGTGCGCGCCGCTCTCTCCTCTCCCGGTGGCCGGCGCGCGCTGCTGCCTCGCTCTCTCTCCCACCGGTCGGCGCGCGGGGATCCCGGCGAGCCGCCACGACCTTGCGCACGCCGCGGGGATCCAGTCACGCAGGCTGCCAGACTTGGAGAAGTCGAAGGCCGGTGGCAGTGGCACCTTCAGCTCGCCGAGCTGCCTCGCCCTCGCCTCTCATCGGTGAAATAGATTAGTAGCAGAATTAGTGTGTTGGCACTGAAAAGCGACTGATTCCATTATACGGATGATGAATTGCATAGCATTGGTGAAACAAATCAGTAGTAGCGGAATTAGTGGTTTTGATACTGAAAAGCGATGGATTGAATGCTGCAAATGATGATGAATGTG]




>consensus_2346#1
TCTTTCTCTCTCCTTTCCTTCACCGGGTGGCACAGTCGGGAGGACAGGAGGAGACAGGGA
GGCCGAGGGAGGCGGAGAGGCCGGCGAGCCGCTCCTCTCCCGCCGGCCGGCGCGCGCCGC
TGCCTCGCCTCCTCTCCCGCCGACTGGTGCGCGCCGCTCTCTCCTCTCCCGGTGGCCGGC
GCGCGCTGCTGCCTCGCTCTCTCTCCCACCGGTCGGCGCGCGGGGATCCCGGCGAGCCGC
CACGACCTTGCGCACGCCGCGGGGATCCAGTCACGCAGGCTGCCAGACTTGGAGAAGTCG
AAGGCCGGTGGCAGTGGCACCTTCAGCTCGCCGAGCTGCCTCGCCCTCGCCTCTCATCGG
TGAAATAGATTAGTAGCAGAATTAGTGTGTTGGCACTGAAAAGCGACTGATTCCATTATA
CGGATGATGAATTGCATAGCATTGGTGAAACAAATCAGTAGTAGCGGAATTAGTGGTTTT
GATACTGAAAAGCGATGGATTGAATGCTGCAAATGATGATGAATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2346#0      ACCACGATCTCTCTTCTGCTTGGAATTCTCTATCCTATTTTTCATCTCATATTCTAACCA 60
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      TTGATTATGCCATGATTGGATCTTGGCACAGTGCTCTGCATGTGTTCTTGTGTTAATCAG 120
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      CTGCCCCTAATCCCCTAGGAGACCAATCTACTGCTGCTTAGCTCCTGATACAAATTTGCA 180
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      CATTGCCCGGTGAAAATTCAGCAACTGAGCAAGCCAACAAGAGCCTGGGTTTCTGAACTC 240
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      TGACTAGCAGTTTCATCAGATTGGTTTGAGCTTGGGAGAGATCGATGGGGTGCGTGTCGT 300
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      CCAAGATCCTGAGCAAATCAGGGAGCTTCCAGGAGAAGGTGGTGAGCCATGGATTCAAGG 360
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      GGAGCAACCTGATCGAGGAGATCATCCTGTCCACCCCCAAGAAGAGCAACGGCGATCAGT 420
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      TCTTGGCCCTCCTCCGCACGTCCACCTCGTCGGCGTCGGCGGCGGCGAGCAGGGCCAAGG 480
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      ACGCCGCCGATCAGAGCACCACGGCGGCGGCGGTGGCCGCCGAGGAGTTTGTCAAGATCG 540
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      AGACGATCAACGTGTCCGAGCTGCTCGCCGGGCTGGAGGAGGAAGAGGAGGAAGAAGAAC 600
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      GCGACGACGGCGAGAGGTGTTCGGCTCAGGCGTGCGTGCTCGATGGCGCGGTGGCGACGC 660
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      CGGCGAGGGCGACGAGCTTTCGCACCGTGGAGGAGTTCGACGCGCTGGTGACGCGGAGCG 720
consensus_2346#1      ------------------------------------------------------------
                                                                                  

consensus_2346#0      GCTCGTCGGAGGTGGCGGAGGCAGCCTCCTCCGCCGATCAAGACGCGACGGGCGCCAAAC 780
consensus_2346#1      -----------------------TCTTTCTCTCTCCTTTCCTTCAC--CGGGTGGCACA- 34
                                              * * ***   *  *     * *  **** * ** * 

consensus_2346#0      CGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACA-AGAGGCGGGCGAGGGCG 839
consensus_2346#1      -GTCGGGAGGACAGGAGGA-GACAGGGAGGCCGAGGGAGGCGGAGAGGCCGGCGAGCCGC 92
                       *****    * ******  * **  *  ****  **   *  ****** ******    

consensus_2346#0      AGGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGC 899
consensus_2346#1      TCCTCTCCCGCCGGCCGGCGCGCGCCGCTGCCTC--GCCTCCTCTCCCGCCGACTGGTGC 150
                            * ** **  * *   * *** ***** *  ** * *     * ** * *   **

consensus_2346#0      AGCCTGCGCGACTGGCTCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACC 959
consensus_2346#1      GCGCCGCTCTCTCCTCTCCCGGTGGCCGGCGCGCGCTGCTGCCTCGCTCTCTCTCCCACC 210
                         * ** *      ****    ** ***   *   * ** **  *    **    ****

consensus_2346#0      CCCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCGCCGCCGCCGCAAGAACGTGGAGGA 1019
consensus_2346#1      GGTCGGCGCGCGGGGATCCCGGCGA-------GCCGCCACGACCTTGCGCACGCCGCGGG 263
                           *  ** *  ** * *  **        ****** *  **    * ***  * ** 

consensus_2346#0      GTACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCTGGTC 1079
consensus_2346#1      G-ATCCAGTCACGCAGGCT-GCCAGACTTGGAGAAGTCGAAGGCCGGTGGC-AGTGGCAC 320
                      * *  *    **** ***  ***  *   * ** *  *   *   * *  * **  *  *

consensus_2346#0      GCGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAG 1139
consensus_2346#1      CTTCAGCTCGC-CGAGCTGCCTCGCCCTCGCCTCTCATCGGTGAAATAGATTAGTAGCAG 379
                         *** ***  * ***      **    * *      **  **    *  * * ** **

consensus_2346#0      ATCCTGGAAGCCATGG--GAGCGGCGGCGGAGG--AGGAGGAGGAGGAGGAAGCG-ACGG 1194
consensus_2346#1      AATTAGTGTGTTGGCACTGAAAAGCGACTGATTCCATTATACGGATGATGAATTGCATAG 439
                      *    *   *        **   *** * **    *  *   *** ** ***  * *  *

consensus_2346#0      CGACGGCGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCGGTGATGGTGGTGCAGGAGT 1254
consensus_2346#1      CATTGGTGA-AACAAATCAGTAGTAGCGGAATTA-------GTGGTTTTGATACTGAA-- 489
                      *   ** **   * *  * * **  **  *   *       *** *  ** * * * *  

consensus_2346#0      AGGCGACGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAA 1314
consensus_2346#1      AAGCGATGGATTGAAT-GCTGCAAATGATGATGAATGTG--------------------- 527
                      * **** ** **   * * *            *  ****                     

consensus_2346#0      ACCCTGTGCTTGCAAAATGTAAATATGAAT 1344
consensus_2346#1      ------------------------------