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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TTTTTTTTTTTTTTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCTAACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCAGATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGTTGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCATGTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGTGGAAAGCAAACATGNCAATA]
[+] EMBL CA762129 [TTTTTTTTTTTTTTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCTAACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCAGATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGTTGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCATGTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGTGGAAAGCAAACATGNCAATA]
consensusID : consensus_2350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATATTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCTAACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCATATATGTTTTCATCAACCGAAC]
[-] EMBL CA767251 [TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATATTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCTAACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCATATATGTTTTCATCAACCGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2350#0 -----------------------------------------------TTTTTTTTTTTTT 13
consensus_2350#1 TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATAT 60
* *
consensus_2350#0 TTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGC 73
consensus_2350#1 TTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGC 120
********************************************* **************
consensus_2350#0 CACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCA 133
consensus_2350#1 CACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCA 180
********************************* **************************
consensus_2350#0 TTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAG 193
consensus_2350#1 TTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAG 240
***************** ******************************************
consensus_2350#0 TGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAA 253
consensus_2350#1 TGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAA 300
************************************ ** *********** ********
consensus_2350#0 GAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAA 313
consensus_2350#1 GAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAA 360
************************************************************
consensus_2350#0 ATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACC 373
consensus_2350#1 ATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACC 420
************************************************************
consensus_2350#0 AGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCT 433
consensus_2350#1 AGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCT 480
******************** **************************** **********
consensus_2350#0 AACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCA 493
consensus_2350#1 AACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCA 540
************* ********************* ************************
consensus_2350#0 GATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGT 553
consensus_2350#1 TATATGTTTTCATCAACCGAAC-------------------------------------- 562
******* *************
consensus_2350#0 TGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCAT 613
consensus_2350#1 ------------------------------------------------------------
consensus_2350#0 GTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGT 673
consensus_2350#1 ------------------------------------------------------------
consensus_2350#0 GGAAAGCAAACATGNCAATA 693
consensus_2350#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||