These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTTTTTTTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCTAACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCAGATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGTTGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCATGTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGTGGAAAGCAAACATGNCAATA] [+] EMBL CA762129 [TTTTTTTTTTTTTTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCTAACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCAGATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGTTGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCATGTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGTGGAAAGCAAACATGNCAATA] consensusID : consensus_2350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATATTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCTAACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCATATATGTTTTCATCAACCGAAC] [-] EMBL CA767251 [TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATATTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCTAACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCATATATGTTTTCATCAACCGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2350#0 -----------------------------------------------TTTTTTTTTTTTT 13 consensus_2350#1 TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATAT 60 * * consensus_2350#0 TTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGC 73 consensus_2350#1 TTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGC 120 ********************************************* ************** consensus_2350#0 CACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCA 133 consensus_2350#1 CACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCA 180 ********************************* ************************** consensus_2350#0 TTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAG 193 consensus_2350#1 TTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAG 240 ***************** ****************************************** consensus_2350#0 TGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAA 253 consensus_2350#1 TGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAA 300 ************************************ ** *********** ******** consensus_2350#0 GAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAA 313 consensus_2350#1 GAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAA 360 ************************************************************ consensus_2350#0 ATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACC 373 consensus_2350#1 ATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACC 420 ************************************************************ consensus_2350#0 AGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCT 433 consensus_2350#1 AGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCT 480 ******************** **************************** ********** consensus_2350#0 AACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCA 493 consensus_2350#1 AACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCA 540 ************* ********************* ************************ consensus_2350#0 GATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGT 553 consensus_2350#1 TATATGTTTTCATCAACCGAAC-------------------------------------- 562 ******* ************* consensus_2350#0 TGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCAT 613 consensus_2350#1 ------------------------------------------------------------ consensus_2350#0 GTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGT 673 consensus_2350#1 ------------------------------------------------------------ consensus_2350#0 GGAAAGCAAACATGNCAATA 693 consensus_2350#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||