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Oryza sativa
cluster # 2350 cluster # 2350       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2350#0 length = 693 sequences # 1  
consensus_2350#1 length = 562 sequences # 1  

consensusID : consensus_2350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [TTTTTTTTTTTTTTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCTAACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCAGATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGTTGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCATGTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGTGGAAAGCAAACATGNCAATA]

[+] EMBL CA762129             [TTTTTTTTTTTTTTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCTAACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCAGATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGTTGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCATGTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGTGGAAAGCAAACATGNCAATA]


>consensus_2350#0 TTTTTTTTTTTTTTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGG GAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTA TACAACATTTCCATTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGA CCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCC AGGAAAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCT GATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACA AGAACCTCACACCAGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATC AGGGCTATCTTCTAACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCT CCTTGCTATCTCAGATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGT GACAGGTTTCTGTTGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGN GGTTGAAATCCATGTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGC CTCCAGCTCTTGTGGAAAGCAAACATGNCAATA



consensusID : consensus_2350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence
                              [TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATATTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCTAACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCATATATGTTTTCATCAACCGAAC]

[-] EMBL CA767251             [TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATATTTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGCCACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCATTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAGTGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAAGAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAAATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACCAGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCTAACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCATATATGTTTTCATCAACCGAAC]


>consensus_2350#1 TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATAT TTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGC CACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCA TTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAG TGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAA GAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAA ATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACC AGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCT AACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCA TATATGTTTTCATCAACCGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2350#0      -----------------------------------------------TTTTTTTTTTTTT 13
consensus_2350#1      TTTACTCACATCAGATGAATCAGTGATTCTATAGTGAAAACCCGACACAGACGAGCATAT 60
                                                                               * *

consensus_2350#0      TTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTAGGGAAAACAGAGGGC 73
consensus_2350#1      TTCCAAGGGGTAGGGCTATTCAGTTCCCATCATTCATCCATCTTACGGAAAACAGAGGGC 120
                      ********************************************* **************

consensus_2350#0      CACAGCATGAACAAATGCTGCACGACTATAAAAGGGATCTCTTGTTATACAACATTTCCA 133
consensus_2350#1      CACAGCATGAACAAATGCTGCACGACTATAAAATGGATCTCTTGTTATACAACATTTCCA 180
                      ********************************* **************************

consensus_2350#0      TTCACCTTTCTTTTTTCGTATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAG 193
consensus_2350#1      TTCACCTTTCTTTTTTCATATATTACCCCCAAGACTTGAAAGATTGACCAGACATAACAG 240
                      ***************** ******************************************

consensus_2350#0      TGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGTAAAAGCGGCCAGGAAAAGGTTAA 253
consensus_2350#1      TGTTAACAAGGCCTAGGGCTCTAACGAACAAAATTGCAAGAGCGGCCAGGAGAAGGTTAA 300
                      ************************************ ** *********** ********

consensus_2350#0      GAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAA 313
consensus_2350#1      GAGCACTCACACGAATCTGTCTTCCAAGCAAGCTATTAAATTTTGCTGATCATGTGCGAA 360
                      ************************************************************

consensus_2350#0      ATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACC 373
consensus_2350#1      ATCTTCAAGCATTACAATTGGAATGTTCCTTCAAGCATTCTATGACAAGAACCTCACACC 420
                      ************************************************************

consensus_2350#0      AGGAGAAGAGATGCCAAAATCTCTCCCATTGTTTTCTCAGGTACATCAGGGCTATCTTCT 433
consensus_2350#1      AGGAGAAGAGATGCCAAAATTTCTCCCATTGTTTTCTCAGGTACATCAGTGCTATCTTCT 480
                      ******************** **************************** **********

consensus_2350#0      AACTCTGCTCCGGACTGGAGAATTGCAGCATCTAAAACTAACTTTCTCCTTGCTATCTCA 493
consensus_2350#1      AACTCTGCTCCGGNCTGGAGAATTGCAGCATCTAATACTAACTTTCTCCTTGCTATCTCA 540
                      ************* ********************* ************************

consensus_2350#0      GATATGTTCTCATCAACCGAACCCTTTGTCACTAGCCTATAGATAGTGACAGGTTTCTGT 553
consensus_2350#1      TATATGTTTTCATCAACCGAAC-------------------------------------- 562
                       ******* *************                                      

consensus_2350#0      TGTCCAATGCGATGGCAGCGATCTTCAGCTTGCCAATCCATCTGGGNGGTTGAAATCCAT 613
consensus_2350#1      ------------------------------------------------------------
                                                                                  

consensus_2350#0      GTCATGTATTATCACTGTATCAGCTCCTATTAAATTCAGACCCTGGCCTCCAGCTCTTGT 673
consensus_2350#1      ------------------------------------------------------------
                                                                                  

consensus_2350#0      GGAAAGCAAACATGNCAATA 693
consensus_2350#1      --------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)