cluster # 2352

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Oryza sativa
cluster # 2352 cluster # 2352 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2352#0 length = 728 sequences # 1

consensus_2352#1 length = 706 sequences # 1

consensusID : consensus_2352#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence

                              [TTGCCAAACATGGGCCCCATGGCTTTTCCCCTCTCCCTCCCCCTCCTCCCAGATTGATGACGCCAGCGCCGCCCCTCTGCCGACGCTGCCCCTTGTCCACCGCGCCGTCGACCGCTGCCGAGGCCGCCGCCGTACGCTACCTCATCGTTATCTGCCGTCGCTGGCTCGCTCGCATCCTCCACCCCTGCTAGCCGTCGCCGCCGGGTCAAGCGCCTCCGCGGCCGCTCGCTTGCATCCTCCTCCTTCGCCGCCGCTGCCGGGTCAACCGCTGTGGCTGACCGGTGCAGCGAGCAGAGTGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGTAGCAAAGGAAGGAGGCTCGACGGCGGATGGCTATCGAGGAATACAGGGCTGGTGAGGAGTGGATCCGCCGTCACCGTCGCCTTACGCGCATGGATTCGACGTCGCCATAGCCGCCGCTCCCACCGGCCTTCGTCGCCCGCGCCTCTCCTGCCGGCGTCGCCTCCATCCCCGCGCCGCCCCCGTCGTCCTCCGCCACCCGTGCTGCTCCCGCCGGCGCCGCCTCCATCCCCGTGCCGCGCTGCAAAGAAGAGGGGAGAAGGAGAGGTGGGTGAAGAACAACACGGAGATTGACATATGGGACCTACTATTAAATTGGAGAGTGTAAATGGAGATGCTGTTGGAGTAAAACGTAGATTTGGCTCTCTAAATTTTTGTTAAGTTTTCAAATAGGATATTTGG]

[+] EMBL AK107810             [TTGCCAAACATGGGCCCCATGGCTTTTCCCCTCTCCCTCCCCCTCCTCCCAGATTGATGACGCCAGCGCCGCCCCTCTGCCGACGCTGCCCCTTGTCCACCGCGCCGTCGACCGCTGCCGAGGCCGCCGCCGTACGCTACCTCATCGTTATCTGCCGTCGCTGGCTCGCTCGCATCCTCCACCCCTGCTAGCCGTCGCCGCCGGGTCAAGCGCCTCCGCGGCCGCTCGCTTGCATCCTCCTCCTTCGCCGCCGCTGCCGGGTCAACCGCTGTGGCTGACCGGTGCAGCGAGCAGAGTGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGTAGCAAAGGAAGGAGGCTCGACGGCGGATGGCTATCGAGGAATACAGGGCTGGTGAGGAGTGGATCCGCCGTCACCGTCGCCTTACGCGCATGGATTCGACGTCGCCATAGCCGCCGCTCCCACCGGCCTTCGTCGCCCGCGCCTCTCCTGCCGGCGTCGCCTCCATCCCCGCGCCGCCCCCGTCGTCCTCCGCCACCCGTGCTGCTCCCGCCGGCGCCGCCTCCATCCCCGTGCCGCGCTGCAAAGAAGAGGGGAGAAGGAGAGGTGGGTGAAGAACAACACGGAGATTGACATATGGGACCTACTATTAAATTGGAGAGTGTAAATGGAGATGCTGTTGGAGTAAAACGTAGATTTGGCTCTCTAAATTTTTGTTAAGTTTTCAAATAGGATATTTGG]




>consensus_2352#0
TTGCCAAACATGGGCCCCATGGCTTTTCCCCTCTCCCTCCCCCTCCTCCCAGATTGATGA
CGCCAGCGCCGCCCCTCTGCCGACGCTGCCCCTTGTCCACCGCGCCGTCGACCGCTGCCG
AGGCCGCCGCCGTACGCTACCTCATCGTTATCTGCCGTCGCTGGCTCGCTCGCATCCTCC
ACCCCTGCTAGCCGTCGCCGCCGGGTCAAGCGCCTCCGCGGCCGCTCGCTTGCATCCTCC
TCCTTCGCCGCCGCTGCCGGGTCAACCGCTGTGGCTGACCGGTGCAGCGAGCAGAGTGGA
GGCGGCGGCGCAACGGTGAGGGAGGGAGTAGCAAAGGAAGGAGGCTCGACGGCGGATGGC
TATCGAGGAATACAGGGCTGGTGAGGAGTGGATCCGCCGTCACCGTCGCCTTACGCGCAT
GGATTCGACGTCGCCATAGCCGCCGCTCCCACCGGCCTTCGTCGCCCGCGCCTCTCCTGC
CGGCGTCGCCTCCATCCCCGCGCCGCCCCCGTCGTCCTCCGCCACCCGTGCTGCTCCCGC
CGGCGCCGCCTCCATCCCCGTGCCGCGCTGCAAAGAAGAGGGGAGAAGGAGAGGTGGGTG
AAGAACAACACGGAGATTGACATATGGGACCTACTATTAAATTGGAGAGTGTAAATGGAG
ATGCTGTTGGAGTAAAACGTAGATTTGGCTCTCTAAATTTTTGTTAAGTTTTCAAATAGG
ATATTTGG

consensusID : consensus_2352#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [TCCGGGAGCAACATCCCCCTCCTCCTAGATTGACCACGTCAGCGCTGCCCCTTGTCCGCCACGCCGTCGACCGCTGCCGAGGCCGCCGCCGTCCACTGCCTTGTCGTTATCCACCGTCGCTCGCTTGCATCCTCTGCCCGTGCTCGCCATCGTCGCCGGGTCAAGCGCCTCCATCGCTGCTCACTCGCATCCTCCGCCGTCCGCTGCCTCGTCGTTATCCACCGCCGCGGGTCAACCGCCGGCCGACCAGTGCAACGAGCGGAGCGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGGGCGCGACGGCGAGGGAGTAGCAAGGGAAGGAGGGAGGCTATATGGCGGATGGCTGTCGAGGAAGACGAGGCTAGCAAGGAACGGATCTGCCATTGTCGTCGCCTCGCGCGCATGGATTCGACGTCGCCATAGTCATCGCTCCCACCGGCCTTCGCTGCCTGTGCCGCTCCCATTGTCCTCCGCCACCTGTGTAGCTCCCGTCGTCCTCCGTCGCTCGCGCTACTCCTGCCGGCGCCACCTCCATAGCCGTGCCGCACTGCAGAGAAGAGAGGAGGAGAGAGGTGGGTGAAGAACAACACAGAGACTGACATATGGGACCCACTATTAAATTGGAGAGTGTAATGGACATGTTGTTGGAGTAAAACGTACTTGGCTCTCTAAATTTTTGGTAAGTTGCCAAATAGGACAT]

[+] EMBL AK064749             [TCCGGGAGCAACATCCCCCTCCTCCTAGATTGACCACGTCAGCGCTGCCCCTTGTCCGCCACGCCGTCGACCGCTGCCGAGGCCGCCGCCGTCCACTGCCTTGTCGTTATCCACCGTCGCTCGCTTGCATCCTCTGCCCGTGCTCGCCATCGTCGCCGGGTCAAGCGCCTCCATCGCTGCTCACTCGCATCCTCCGCCGTCCGCTGCCTCGTCGTTATCCACCGCCGCGGGTCAACCGCCGGCCGACCAGTGCAACGAGCGGAGCGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGGGCGCGACGGCGAGGGAGTAGCAAGGGAAGGAGGGAGGCTATATGGCGGATGGCTGTCGAGGAAGACGAGGCTAGCAAGGAACGGATCTGCCATTGTCGTCGCCTCGCGCGCATGGATTCGACGTCGCCATAGTCATCGCTCCCACCGGCCTTCGCTGCCTGTGCCGCTCCCATTGTCCTCCGCCACCTGTGTAGCTCCCGTCGTCCTCCGTCGCTCGCGCTACTCCTGCCGGCGCCACCTCCATAGCCGTGCCGCACTGCAGAGAAGAGAGGAGGAGAGAGGTGGGTGAAGAACAACACAGAGACTGACATATGGGACCCACTATTAAATTGGAGAGTGTAATGGACATGTTGTTGGAGTAAAACGTACTTGGCTCTCTAAATTTTTGGTAAGTTGCCAAATAGGACAT]




>consensus_2352#1
TCCGGGAGCAACATCCCCCTCCTCCTAGATTGACCACGTCAGCGCTGCCCCTTGTCCGCC
ACGCCGTCGACCGCTGCCGAGGCCGCCGCCGTCCACTGCCTTGTCGTTATCCACCGTCGC
TCGCTTGCATCCTCTGCCCGTGCTCGCCATCGTCGCCGGGTCAAGCGCCTCCATCGCTGC
TCACTCGCATCCTCCGCCGTCCGCTGCCTCGTCGTTATCCACCGCCGCGGGTCAACCGCC
GGCCGACCAGTGCAACGAGCGGAGCGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGGGCG
CGACGGCGAGGGAGTAGCAAGGGAAGGAGGGAGGCTATATGGCGGATGGCTGTCGAGGAA
GACGAGGCTAGCAAGGAACGGATCTGCCATTGTCGTCGCCTCGCGCGCATGGATTCGACG
TCGCCATAGTCATCGCTCCCACCGGCCTTCGCTGCCTGTGCCGCTCCCATTGTCCTCCGC
CACCTGTGTAGCTCCCGTCGTCCTCCGTCGCTCGCGCTACTCCTGCCGGCGCCACCTCCA
TAGCCGTGCCGCACTGCAGAGAAGAGAGGAGGAGAGAGGTGGGTGAAGAACAACACAGAG
ACTGACATATGGGACCCACTATTAAATTGGAGAGTGTAATGGACATGTTGTTGGAGTAAA
ACGTACTTGGCTCTCTAAATTTTTGGTAAGTTGCCAAATAGGACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2352#0      TTGCCAAACATGGGCCCCATGGCTTTTCCCCTCTCCCTCCCCCTCCTCCCAGATTGATGA 60
consensus_2352#1      ------------------------TCCGGGAGCAACATCCCCCTCCTCCTAGATTGACCA 36
                                              *       *  * ************ *******  *

consensus_2352#0      CGCCAGCGCCGCCCCTCTGCCGACGCTGCCCCTTGTCCACCGCGCCGTCGACCGCTGCCG 120
consensus_2352#1      CGTCAGCGC-----------------TGCCCCTTGTCCGCCACGCCGTCGACCGCTGCCG 79
                      ** ******                 ************ ** ******************

consensus_2352#0      AGGCCGCCGCCGTACGCTACCTCATCGTTATCTGCCGTCGCTGGCTCGCTCGCATCCTCC 180
consensus_2352#1      AGGCCGCCGCCGTCCACTGCCTTGTCGTTATCCACCGTCG----CTCGCTTGCATCCTCT 135
                      ************* * ** ***  ********  ******    ****** ******** 

consensus_2352#0      ACCCCTGCTAGCCGTCGCCGCCGGGTCAAGCGCCTCCGCGGCCGCTCGCTTGCATCCTCC 240
consensus_2352#1      GCCCGTGCTCGCCATCGTCGCCGGGTCAAGCGCCTCCATCGCTGCTCACTCGCATCCTCC 195
                       *** **** *** *** *******************   ** **** ** *********

consensus_2352#0      TCC-TTCGCCGCC------------GCTGCCG--GGTCAACCGCTGTGGCTGACCGGTGC 285
consensus_2352#1      GCCGTCCGCTGCCTCGTCGTTATCCACCGCCGCGGGTCAACCGCCG--GCCGACCAGTGC 253
                       ** * *** ***             * ****  ********** *  ** **** ****

consensus_2352#0      AGCGAGCAGAGTGGAGGCGGCGGCGCAACGGTGAGGGAGGGAG----------------- 328
consensus_2352#1      AACGAGCGGAGCGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGGGCGCGACGGCGAGGGA 313
                      * ***** *** *******************************                 

consensus_2352#0      -TAGCAAAGGAAGGAGG----CTCGACGGCGGATGGCTATCGAGGAATACAGGGCTGGTG 383
consensus_2352#1      GTAGCAAGGGAAGGAGGGAGGCTATATGGCGGATGGCTGTCGAGGAAGACGAGGCTAGCA 373
                       ****** *********    **  * *********** ******** **  **** *  

consensus_2352#0      AGGAGTGGATCCGCCGTCACCGTCGCCTTACGCGCATGGATTCGACGTCGCCATAGCCGC 443
consensus_2352#1      AGGAACGGATCTGCCATTGTCGTCGCCTCGCGCGCATGGATTCGACGTCGCCATAGTCAT 433
                      ****  ***** *** *   ********  ************************** *  

consensus_2352#0      CGCTCCCACCGGCCTTCGTCGCCCGCGCCTCTCCTGCCGGCGTCGCCTCCATCCCCGCGC 503
consensus_2352#1      CGCTCCCACCGGCCTTCGCTGCCTGTGCCGCTCCCATTGTCCT--CCGCCA--CCTGTGT 489
                      ******************  *** * *** ****    * * *  ** ***  ** * * 

consensus_2352#0      CGCCCCCGTCGTCCTCCGCCACCCGTGCTGCTCCCGCCGGCGCCGCCTCCATCCCCGTGC 563
consensus_2352#1      AGCTCCCGTCGTCCTCCGTCGCTCGCGCTACTCCTGCCGGCGCCACCTCCATAGCCGTGC 549
                       ** ************** * * ** *** **** ********* *******  ******

consensus_2352#0      CGCGCTGCAAAGAAGAGGGGAGAAGGAGAGGTGGGTGAAGAACAACACGGAGATTGACAT 623
consensus_2352#1      CGCACTGCAGAGAAGAGAGGAGGAG-AGAGGTGGGTGAAGAACAACACAGAGACTGACAT 608
                      *** ***** ******* **** ** ********************** **** ******

consensus_2352#0      ATGGGACCTACTATTAAATTGGAGAGTGTAAATGGAGATGCTGTTGGAGTAAAACGTAGA 683
consensus_2352#1      ATGGGACCCACTATTAAATTGGAGAGTGTAA-TGGACATGTTGTTGGAGTAAAACGT--A 665
                      ******** ********************** **** *** ****************  *

consensus_2352#0      TTTGGCTCTCTAAATTTTTGTTAAGTTTTCAAATAGGATATTTGG 728
consensus_2352#1      CTTGGCTCTCTAAATTTTTGGTAAGTTGCCAAATAGGACAT---- 706
                       ******************* ******  ********* **