These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [TTGCCAAACATGGGCCCCATGGCTTTTCCCCTCTCCCTCCCCCTCCTCCCAGATTGATGACGCCAGCGCCGCCCCTCTGCCGACGCTGCCCCTTGTCCACCGCGCCGTCGACCGCTGCCGAGGCCGCCGCCGTACGCTACCTCATCGTTATCTGCCGTCGCTGGCTCGCTCGCATCCTCCACCCCTGCTAGCCGTCGCCGCCGGGTCAAGCGCCTCCGCGGCCGCTCGCTTGCATCCTCCTCCTTCGCCGCCGCTGCCGGGTCAACCGCTGTGGCTGACCGGTGCAGCGAGCAGAGTGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGTAGCAAAGGAAGGAGGCTCGACGGCGGATGGCTATCGAGGAATACAGGGCTGGTGAGGAGTGGATCCGCCGTCACCGTCGCCTTACGCGCATGGATTCGACGTCGCCATAGCCGCCGCTCCCACCGGCCTTCGTCGCCCGCGCCTCTCCTGCCGGCGTCGCCTCCATCCCCGCGCCGCCCCCGTCGTCCTCCGCCACCCGTGCTGCTCCCGCCGGCGCCGCCTCCATCCCCGTGCCGCGCTGCAAAGAAGAGGGGAGAAGGAGAGGTGGGTGAAGAACAACACGGAGATTGACATATGGGACCTACTATTAAATTGGAGAGTGTAAATGGAGATGCTGTTGGAGTAAAACGTAGATTTGGCTCTCTAAATTTTTGTTAAGTTTTCAAATAGGATATTTGG] [+] EMBL AK107810 [TTGCCAAACATGGGCCCCATGGCTTTTCCCCTCTCCCTCCCCCTCCTCCCAGATTGATGACGCCAGCGCCGCCCCTCTGCCGACGCTGCCCCTTGTCCACCGCGCCGTCGACCGCTGCCGAGGCCGCCGCCGTACGCTACCTCATCGTTATCTGCCGTCGCTGGCTCGCTCGCATCCTCCACCCCTGCTAGCCGTCGCCGCCGGGTCAAGCGCCTCCGCGGCCGCTCGCTTGCATCCTCCTCCTTCGCCGCCGCTGCCGGGTCAACCGCTGTGGCTGACCGGTGCAGCGAGCAGAGTGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGTAGCAAAGGAAGGAGGCTCGACGGCGGATGGCTATCGAGGAATACAGGGCTGGTGAGGAGTGGATCCGCCGTCACCGTCGCCTTACGCGCATGGATTCGACGTCGCCATAGCCGCCGCTCCCACCGGCCTTCGTCGCCCGCGCCTCTCCTGCCGGCGTCGCCTCCATCCCCGCGCCGCCCCCGTCGTCCTCCGCCACCCGTGCTGCTCCCGCCGGCGCCGCCTCCATCCCCGTGCCGCGCTGCAAAGAAGAGGGGAGAAGGAGAGGTGGGTGAAGAACAACACGGAGATTGACATATGGGACCTACTATTAAATTGGAGAGTGTAAATGGAGATGCTGTTGGAGTAAAACGTAGATTTGGCTCTCTAAATTTTTGTTAAGTTTTCAAATAGGATATTTGG] consensusID : consensus_2352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [TCCGGGAGCAACATCCCCCTCCTCCTAGATTGACCACGTCAGCGCTGCCCCTTGTCCGCCACGCCGTCGACCGCTGCCGAGGCCGCCGCCGTCCACTGCCTTGTCGTTATCCACCGTCGCTCGCTTGCATCCTCTGCCCGTGCTCGCCATCGTCGCCGGGTCAAGCGCCTCCATCGCTGCTCACTCGCATCCTCCGCCGTCCGCTGCCTCGTCGTTATCCACCGCCGCGGGTCAACCGCCGGCCGACCAGTGCAACGAGCGGAGCGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGGGCGCGACGGCGAGGGAGTAGCAAGGGAAGGAGGGAGGCTATATGGCGGATGGCTGTCGAGGAAGACGAGGCTAGCAAGGAACGGATCTGCCATTGTCGTCGCCTCGCGCGCATGGATTCGACGTCGCCATAGTCATCGCTCCCACCGGCCTTCGCTGCCTGTGCCGCTCCCATTGTCCTCCGCCACCTGTGTAGCTCCCGTCGTCCTCCGTCGCTCGCGCTACTCCTGCCGGCGCCACCTCCATAGCCGTGCCGCACTGCAGAGAAGAGAGGAGGAGAGAGGTGGGTGAAGAACAACACAGAGACTGACATATGGGACCCACTATTAAATTGGAGAGTGTAATGGACATGTTGTTGGAGTAAAACGTACTTGGCTCTCTAAATTTTTGGTAAGTTGCCAAATAGGACAT] [+] EMBL AK064749 [TCCGGGAGCAACATCCCCCTCCTCCTAGATTGACCACGTCAGCGCTGCCCCTTGTCCGCCACGCCGTCGACCGCTGCCGAGGCCGCCGCCGTCCACTGCCTTGTCGTTATCCACCGTCGCTCGCTTGCATCCTCTGCCCGTGCTCGCCATCGTCGCCGGGTCAAGCGCCTCCATCGCTGCTCACTCGCATCCTCCGCCGTCCGCTGCCTCGTCGTTATCCACCGCCGCGGGTCAACCGCCGGCCGACCAGTGCAACGAGCGGAGCGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGGGCGCGACGGCGAGGGAGTAGCAAGGGAAGGAGGGAGGCTATATGGCGGATGGCTGTCGAGGAAGACGAGGCTAGCAAGGAACGGATCTGCCATTGTCGTCGCCTCGCGCGCATGGATTCGACGTCGCCATAGTCATCGCTCCCACCGGCCTTCGCTGCCTGTGCCGCTCCCATTGTCCTCCGCCACCTGTGTAGCTCCCGTCGTCCTCCGTCGCTCGCGCTACTCCTGCCGGCGCCACCTCCATAGCCGTGCCGCACTGCAGAGAAGAGAGGAGGAGAGAGGTGGGTGAAGAACAACACAGAGACTGACATATGGGACCCACTATTAAATTGGAGAGTGTAATGGACATGTTGTTGGAGTAAAACGTACTTGGCTCTCTAAATTTTTGGTAAGTTGCCAAATAGGACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2352#0 TTGCCAAACATGGGCCCCATGGCTTTTCCCCTCTCCCTCCCCCTCCTCCCAGATTGATGA 60 consensus_2352#1 ------------------------TCCGGGAGCAACATCCCCCTCCTCCTAGATTGACCA 36 * * * ************ ******* * consensus_2352#0 CGCCAGCGCCGCCCCTCTGCCGACGCTGCCCCTTGTCCACCGCGCCGTCGACCGCTGCCG 120 consensus_2352#1 CGTCAGCGC-----------------TGCCCCTTGTCCGCCACGCCGTCGACCGCTGCCG 79 ** ****** ************ ** ****************** consensus_2352#0 AGGCCGCCGCCGTACGCTACCTCATCGTTATCTGCCGTCGCTGGCTCGCTCGCATCCTCC 180 consensus_2352#1 AGGCCGCCGCCGTCCACTGCCTTGTCGTTATCCACCGTCG----CTCGCTTGCATCCTCT 135 ************* * ** *** ******** ****** ****** ******** consensus_2352#0 ACCCCTGCTAGCCGTCGCCGCCGGGTCAAGCGCCTCCGCGGCCGCTCGCTTGCATCCTCC 240 consensus_2352#1 GCCCGTGCTCGCCATCGTCGCCGGGTCAAGCGCCTCCATCGCTGCTCACTCGCATCCTCC 195 *** **** *** *** ******************* ** **** ** ********* consensus_2352#0 TCC-TTCGCCGCC------------GCTGCCG--GGTCAACCGCTGTGGCTGACCGGTGC 285 consensus_2352#1 GCCGTCCGCTGCCTCGTCGTTATCCACCGCCGCGGGTCAACCGCCG--GCCGACCAGTGC 253 ** * *** *** * **** ********** * ** **** **** consensus_2352#0 AGCGAGCAGAGTGGAGGCGGCGGCGCAACGGTGAGGGAGGGAG----------------- 328 consensus_2352#1 AACGAGCGGAGCGGAGGCGGCGGCGCAACGGTGAGGGAGGGAGGGCGCGACGGCGAGGGA 313 * ***** *** ******************************* consensus_2352#0 -TAGCAAAGGAAGGAGG----CTCGACGGCGGATGGCTATCGAGGAATACAGGGCTGGTG 383 consensus_2352#1 GTAGCAAGGGAAGGAGGGAGGCTATATGGCGGATGGCTGTCGAGGAAGACGAGGCTAGCA 373 ****** ********* ** * *********** ******** ** **** * consensus_2352#0 AGGAGTGGATCCGCCGTCACCGTCGCCTTACGCGCATGGATTCGACGTCGCCATAGCCGC 443 consensus_2352#1 AGGAACGGATCTGCCATTGTCGTCGCCTCGCGCGCATGGATTCGACGTCGCCATAGTCAT 433 **** ***** *** * ******** ************************** * consensus_2352#0 CGCTCCCACCGGCCTTCGTCGCCCGCGCCTCTCCTGCCGGCGTCGCCTCCATCCCCGCGC 503 consensus_2352#1 CGCTCCCACCGGCCTTCGCTGCCTGTGCCGCTCCCATTGTCCT--CCGCCA--CCTGTGT 489 ****************** *** * *** **** * * * ** *** ** * * consensus_2352#0 CGCCCCCGTCGTCCTCCGCCACCCGTGCTGCTCCCGCCGGCGCCGCCTCCATCCCCGTGC 563 consensus_2352#1 AGCTCCCGTCGTCCTCCGTCGCTCGCGCTACTCCTGCCGGCGCCACCTCCATAGCCGTGC 549 ** ************** * * ** *** **** ********* ******* ****** consensus_2352#0 CGCGCTGCAAAGAAGAGGGGAGAAGGAGAGGTGGGTGAAGAACAACACGGAGATTGACAT 623 consensus_2352#1 CGCACTGCAGAGAAGAGAGGAGGAG-AGAGGTGGGTGAAGAACAACACAGAGACTGACAT 608 *** ***** ******* **** ** ********************** **** ****** consensus_2352#0 ATGGGACCTACTATTAAATTGGAGAGTGTAAATGGAGATGCTGTTGGAGTAAAACGTAGA 683 consensus_2352#1 ATGGGACCCACTATTAAATTGGAGAGTGTAA-TGGACATGTTGTTGGAGTAAAACGT--A 665 ******** ********************** **** *** **************** * consensus_2352#0 TTTGGCTCTCTAAATTTTTGTTAAGTTTTCAAATAGGATATTTGG 728 consensus_2352#1 CTTGGCTCTCTAAATTTTTGGTAAGTTGCCAAATAGGACAT---- 706 ******************* ****** ********* ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||