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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1802 fasta sequence
[TTGGCTGGTTGGTCGGCGAATTGCACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACGTAATGCTCTGCTCTTTACCACCCATTGAATTCTCTGACAGAGACAGAGATACTAGTCGAGTTCTTTCTAATCTTCTCCCAACATCAAATATCCAAATAAAATCATTTCATCTGCTCGATTCTTCGCAGCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGCTCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTTTGTCATCATGTGGAATGCAATCAAGACATGGATATGAAGGACAACTGAATGCATGTTGGACGCATAAGCTTACACAGAAAGAACTAGACCGGATTCGTTCATCAGGTTTTCTTATTCTAGTTATACACGGAAGGGATGATGTTGTAGCTCAGTTGTATCATGCAAGGAGACTAGCAGAGAAGCTCCAGCCTGCTGCTAAACTGGTTGAACTCCATGGAGGCCACCTGGTGAGCCACGAAAGAACAGCTGAGGTTAATATGTCCCTCATGGAGATGATAAAAGCATCAAAATCAAATACAGATCAGGGGGAATGGTCAAACCTTCCTAAGAAGTCTGATGATCTACTTCTTGCTGGATCAGATAGTCGTCTTGCTAAACGAGAATGCAACATCATCGTTATATACAATCTACTTGGGAAGTTGCAACTCATTTTGCTTTTCTTCTTTGGAGTATTTTATATTATTCTTGAGCATGCTAGGAGGGTACTAAGAGTTTTGAAGCCTGTGAGAGTATCAGCTACCAGCTTATAGTCAAACAAGGGATTTTTATTTTCAAGGCTCTTTTCGACGTCTTCAGTTCCATTTCTGAATTTTGCAGCAGCACAGAGATTCTCGGTAACTAAGAATTTACTGCGGCATAGAAATTAGTCAGCGAATAATTGCAATATAAGGCCATTCATTCTTCGGGAAAGTGTGGATTTGAAGAGTTCTGATTTGTATGGTATTTGTTGTACAGGGTTAAAATTACAGGTTGGTCCTTCTAGGAATTGTTTGGTAATTTATCTCTCCTTTTATTAATGTGGGAGAGAAAATTGCCTGCAATCTATTGAGGATGTGTGTTGTCCAAAACATAAATGGAGCATACATTTTTGCAATGAAAAATTCCTTTTCCA]
[+] EMBL AK066972 [TTGGCTGGTTGGTCGGCGAATTGCACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACGTAATGCTCTGCTCTTTACCACCCATTGAATTCTCTGACAGAGACAGAGATACTAGTCGAGTTCTTTCTAATCTTCTCCCAACATCAAATATCCAAATAAAATCATTTCATCTGCTCGATTCTTCGCAGCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGCTCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTTTGTCATCATGTGGAATGCAATCAAGACATGGATATGAAGGACAACTGAATGCATGTTGGACGCATAAGCTTACACAGAAAGAACTAGACCGGATTCGTTCATCAGGTTTTCTTATTCTAGTTATACACGGAAGGGATGATGTTGTAGCTCAGTTGTATCATGCAAGGAGACTAGCAGAGAAGCTCCAGCCTGCTGCTAAACTGGTTGAACTCCATGGAGGCCACCTGGTGAGCCACGAAAGAACAGCTGAGGTTAATATGTCCCTCATGGAGATGATAAAAGCATCAAAATCAAATACAGATCAGGGGGAATGGTCAAACCTTCCTAAGAAGTCTGATGATCTACTTCTTGCTGGATCAGATAGTCGTCTTGCTAAACGAGAATGCAACATCATCGTTATATACAATCTACTTGGGAAGTTGCAACTCATTTTGCTTTTCTTCTTTGGAGTATTTTATATTATTCTTGAGCATGCTAGGAGGGTACTAAGAGTTTTGAAGCCTGTGAGAGTATCAGCTACCAGCTTATAGTCAAACAAGGGATTTTTATTTTCAAGGCTCTTTTCGACGTCTTCAGTTCCATTTCTGAATTTTGCAGCAGCACAGAGATTCTCGGTAACTAAGAATTTACTGCGGCATAGAAATTAGTCAGCGAATAATTGCAATATAAGGCCATTCATTCTTCGGGAAAGTGTGGATTTGAAGAGTTCTGATTTGTATGGTATTTGTTGTACAGGGTTAAAATTACAGGTTGGTCCTTCTAGGAATTGTTTGGTAATTTATCTCTCCTTTTATTAATGTGGGAGAGAAAATTGCCTGCAATCTATTGAGGATGTGTGTTGTCCAAAACATAAATGGAGCATACATTTTTGCAATGAAAAATTCCTTTTCCA]
consensusID : consensus_2357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[ACTTACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGTCCCCCGCCGGCGACGATGGCGCCGCCGGGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGATCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTT]
[+] EMBL CB659175 [ACTTACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGTCCCCCGCCGGCGACGATGGCGCCGCCGGGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGATCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2357#0 TTGGCTGGTTGGTCGGCGAATTGCACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGA 60
consensus_2357#1 -------------------ACT-TACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGA 40
* * ************************************
consensus_2357#0 AGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCC 120
consensus_2357#1 AGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCC 100
************************************************************
consensus_2357#0 CGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGC 180
consensus_2357#1 CGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGC 160
************************************************************
consensus_2357#0 GACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAG 240
consensus_2357#1 GACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAG 220
************************************************************
consensus_2357#0 AGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAG 300
consensus_2357#1 AGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAG 280
************************************************************
consensus_2357#0 TCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGGGC 360
consensus_2357#1 TCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGTCC 340
********************************************************* *
consensus_2357#0 GCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAA 420
consensus_2357#1 CCCG------------CCGGCGACGATGGC-----------------GCCGCCGGGGAGG 371
*** ** * ** *** ******* *
consensus_2357#0 TCGCAGTACACGTAATGCTCTGCTCTTTACCACCCATTGAATTCTCTGACAGAGACAGAG 480
consensus_2357#1 GCGCCG---------AGGTCTGCTGCTT------------------CGACA---ACCGCG 401
*** * * ****** ** **** ** * *
consensus_2357#0 ATACTAGTCGAGTTCTTTCTAATCTTCTCCCAACATCAAATATCCAAATAAAATCATTTC 540
consensus_2357#1 GCATTGGCCGG----------AGCTCCGTGCCGCCGCACAAATCGCAGTA---------- 441
* * * ** * ** * * * ** * *** * **
consensus_2357#0 ATCTGCTCGATTCTTCGCAGCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGCT 600
consensus_2357#1 -----------------CACCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGAT 484
** ************************************** *
consensus_2357#0 CATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCC 660
consensus_2357#1 CATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCC 544
************************************************************
consensus_2357#0 AAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGA 720
consensus_2357#1 AAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGA 604
************************************************************
consensus_2357#0 GGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTT 780
consensus_2357#1 GGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTT 664
************************************************************
consensus_2357#0 CTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGG 840
consensus_2357#1 CTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGG 724
************************************************************
consensus_2357#0 GAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATAT 900
consensus_2357#1 GAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATAT 784
************************************************************
consensus_2357#0 GTGAAAGGTTTGTCATCATGTGGAATGCAATCAAGACATGGATATGAAGGACAACTGAAT 960
consensus_2357#1 GTGAAAGGTT-------------------------------------------------- 794
**********
consensus_2357#0 GCATGTTGGACGCATAAGCTTACACAGAAAGAACTAGACCGGATTCGTTCATCAGGTTTT 1020
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 CTTATTCTAGTTATACACGGAAGGGATGATGTTGTAGCTCAGTTGTATCATGCAAGGAGA 1080
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 CTAGCAGAGAAGCTCCAGCCTGCTGCTAAACTGGTTGAACTCCATGGAGGCCACCTGGTG 1140
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 AGCCACGAAAGAACAGCTGAGGTTAATATGTCCCTCATGGAGATGATAAAAGCATCAAAA 1200
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 TCAAATACAGATCAGGGGGAATGGTCAAACCTTCCTAAGAAGTCTGATGATCTACTTCTT 1260
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 GCTGGATCAGATAGTCGTCTTGCTAAACGAGAATGCAACATCATCGTTATATACAATCTA 1320
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 CTTGGGAAGTTGCAACTCATTTTGCTTTTCTTCTTTGGAGTATTTTATATTATTCTTGAG 1380
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 CATGCTAGGAGGGTACTAAGAGTTTTGAAGCCTGTGAGAGTATCAGCTACCAGCTTATAG 1440
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 TCAAACAAGGGATTTTTATTTTCAAGGCTCTTTTCGACGTCTTCAGTTCCATTTCTGAAT 1500
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 TTTGCAGCAGCACAGAGATTCTCGGTAACTAAGAATTTACTGCGGCATAGAAATTAGTCA 1560
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 GCGAATAATTGCAATATAAGGCCATTCATTCTTCGGGAAAGTGTGGATTTGAAGAGTTCT 1620
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 GATTTGTATGGTATTTGTTGTACAGGGTTAAAATTACAGGTTGGTCCTTCTAGGAATTGT 1680
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 TTGGTAATTTATCTCTCCTTTTATTAATGTGGGAGAGAAAATTGCCTGCAATCTATTGAG 1740
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 GATGTGTGTTGTCCAAAACATAAATGGAGCATACATTTTTGCAATGAAAAATTCCTTTTC 1800
consensus_2357#1 ------------------------------------------------------------
consensus_2357#0 CA 1802
consensus_2357#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||