cluster # 2372

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Oryza sativa
cluster # 2372 cluster # 2372 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2372#0 length = 1413 sequences # 1

consensus_2372#1 length = 693 sequences # 1

consensusID : consensus_2372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1413
fasta sequence

                              [TTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATGGAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCACTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAGGCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCAGAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAGCATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTGGAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAGCTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTGGACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTTGAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAGGTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCTCGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATTGTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTTATACTTGCTGTGTGAATTGTGATCTCCATATTACCAATCATACTTATTC]

[+] EMBL AK060289             [TTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATGGAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCACTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAGGCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCAGAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAGCATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTGGAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAGCTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTGGACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTTGAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAGGTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCTCGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATTGTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTTATACTTGCTGTGTGAATTGTGATCTCCATATTACCAATCATACTTATTC]




>consensus_2372#0
TTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATG
GAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCA
CTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAG
GCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCA
GAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAG
CATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTG
GAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAG
CTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTG
GACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTT
GAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAG
GTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCT
CGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGT
CTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAG
AAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATT
GTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAAT
AGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTC
AACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATG
TCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAA
AGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGT
AGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTC
CAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTG
GCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACT
GCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTTATACTTGCTGTGTGAA
TTGTGATCTCCATATTACCAATCATACTTATTC

consensusID : consensus_2372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [GTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATAGACCGACATCGACAATACGATTGTGGAGCCTGAGAGGCTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTTGCCGTTACCGTCGATCCAGCCCTTTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCGCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTAAAAAAAAAAAA]

[-] EMBL CA762209             [GTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATAGACCGACATCGACAATACGATTGTGGAGCCTGAGAGGCTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAGCAGCTGCTTTTTGCCGTTACCGTCGATCCAGCCCTTTTCGCCACCTTCAGAAATGTCAGTATTTGCAGGGGGCCTGTCTTCGCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGAAGTGCAGATACATTGTGGTGTAAAAAAAAAAAA]




>consensus_2372#1
GTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGTCTGAA
GGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAGAAGAC
CATAGCTTCTCTCGGCCGTCAGTTGAAATCATAGACCGACATCGACAATACGATTGTGGA
GCCTGAGAGGCTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAATAGTGA
TGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTCAACAG
CAGCTGCTTTTTGCCGTTACCGTCGATCCAGCCCTTTTCGCCACCTTCAGAAATGTCAGT
ATTTGCAGGGGGCCTGTCTTCGCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAAAGAGC
TGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGTAGGTA
GATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTCCAGCA
AGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTGGCTGT
TTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACTGCAGA
AGTGCAGATACATTGTGGTGTAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2372#0      TTAGAGGTGAAGTTTGAAGAAGAGAAAGCTCGTTCTGTTCAGACTGTTAAGGAATCAATG 60
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      GAGGCACAGCTATGCTCATCAAACACCGAAGTACTAAAACTGCGTGACATTGTTAAAGCA 120
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      CTAGAAAATGAGGTAGAAAAGGAGAAGGCACTGCATGAAGATCTTTCAGCACAGTTGGAG 180
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      GCGAAGATCGAAGCAGAGAGAACTTTTTCTGTGGAGGCTATTAAAGAATCATTTCAGTCA 240
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      GAACTCCAGTCAGTGAACTCAGAAGTTGTGGAGCTGCGCGGTATGGTGACTGCACTTGAG 300
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      CATGAGGTGGTAAAGGAGAAAACATTTTCTGCAGAGCTCCAAATGCAGCTAGAAGCTCTG 360
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      GAGGCAATAAAAAGGGTGTTGGAGTCTGAGATTGAGTCTGCACATCAGGATAACAGAAAG 420
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      CTCAATGATAAGGTGAAGTCTTTTGAAGCAAAACTGAAAAAACAGGTGTCTTCAGCGGTG 480
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      GACTTCACAGCCAAGGAAGAAGCCATGCAGTCAGAGAGAAGGGCCATGAAGCAACAACTT 540
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      GAAGCAGCAAAGATGGAAGTTGGAAAGCTGACAAACAAGGTGAGCTTGCTCCAAGGGGAG 600
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      GTGTTACAGGAGAGATTGTTATCAGAAGAGTTCGAACAAGAATACCACAAGCTGGAGGCT 660
consensus_2372#1      ------------------------------------------------------------
                                                                                  

consensus_2372#0      CGGCTGTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGT 720
consensus_2372#1      -----GTCAAGGGATAGCCGGGACGCGAAGCTCTGGCGACTCGCAAATTCAAATGGGGGT 55
                           *******************************************************

consensus_2372#0      CTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAG 780
consensus_2372#1      CTGAAGGCCAAGCAGGAGAAGGAACTTGCAAATGCTGCTGGGAAGCTCGCAGAATGCCAG 115
                      ************************************************************

consensus_2372#0      AAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATTGACCGACATCGACAATACGATT 840
consensus_2372#1      AAGACCATAGCTTCTCTCGGCCGTCAGTTGAAATCATAGACCGACATCGACAATACGATT 175
                      ************************************* **********************

consensus_2372#0      GTGGAGCCTGAGAGACTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAAT 900
consensus_2372#1      GTGGAGCCTGAGAGGCTGGAACCCAGAGAAATCAGAGAAATGCCGCTCGATTTTAGAAAT 235
                      ************** *********************************************

consensus_2372#0      AGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTC 960
consensus_2372#1      AGTGATGCTGACTTTGCAGTATTTGCAGATGAGTTATATGATTTTGATCTTCCAAAGGTC 295
                      ************************************************************

consensus_2372#0      AACAGCAGCTGCTTTTCGCCGTTACCGTCGATCCAGCCCTCTTCGCCACCTTCAGAAATG 1020
consensus_2372#1      AACAGCAGCTGCTTTTTGCCGTTACCGTCGATCCAGCCCTTTTCGCCACCTTCAGAAATG 355
                      **************** *********************** *******************

consensus_2372#0      TCAGTATTTGCAGGGGGCCTGTCTTCACTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAA 1080
consensus_2372#1      TCAGTATTTGCAGGGGGCCTGTCTTCGCTTAGTAGTTTCAGAAGCAAAAGAAGAAAGTAA 415
                      ************************** *********************************

consensus_2372#0      AGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGT 1140
consensus_2372#1      AGAGCTGGTGAAAACAAACTGTCCAGATGCTACTAACAGTTCATGGATGCTCTCATCTGT 475
                      ************************************************************

consensus_2372#0      AGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTC 1200
consensus_2372#1      AGGTAGATCAGTGTACATTTACAGAAACTGATTGTAGATTCTGTGTGCTGAATTCCGTTC 535
                      ************************************************************

consensus_2372#0      CAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTG 1260
consensus_2372#1      CAGCAAGCTCAGTTTTTTTTTCACAGCCTTCTTGATGAGATTTTTACTGTATCAGTGTTG 595
                      ************************************************************

consensus_2372#0      GCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACT 1320
consensus_2372#1      GCTGTTTTGGTGCCAGAAAAAATGGGAAGAAAAATGTAAACTCAGTATCAGTGTGAGACT 655
                      ************************************************************

consensus_2372#0      GCAGAAGTGCAGATACATTGTGGTGTATTTGTGTTGTGCGGCTTATACTTGCTGTGTGAA 1380
consensus_2372#1      GCAGAAGTGCAGATACATTGTGGTGTAAAAAAAAAAAA---------------------- 693
                      ***************************                                 

consensus_2372#0      TTGTGATCTCCATATTACCAATCATACTTATTC 1413
consensus_2372#1      ---------------------------------