These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [TTTTTTTTTTTTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNGTACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC] [+] EMBL CA764579 [TTTTTTTTTTTTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNGTACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC] consensusID : consensus_2374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGATCGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCATGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCAATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGGCAT] [+] EMBL CA762218 [TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGATCGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCATGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCAATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2374#0 ------------------------------------------------------------ consensus_2374#1 TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGAT 60 consensus_2374#0 --------------------------------------------------TTTTTTTTTT 10 consensus_2374#1 CGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCA 120 * * consensus_2374#0 TTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAA 70 consensus_2374#1 TGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAA 180 * * * **************************************** **** consensus_2374#0 ATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGT 130 consensus_2374#1 ATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGT 240 ************************************************************ consensus_2374#0 GCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTC 190 consensus_2374#1 GCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTC 300 ************************************************************ consensus_2374#0 TAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGG 250 consensus_2374#1 TAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAG-TGAGG 359 ***************************************************** ***** consensus_2374#0 TTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGG 310 consensus_2374#1 TTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGG 419 ************************************************************ consensus_2374#0 AAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCAT 370 consensus_2374#1 AAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCAT 479 ************************************************************ consensus_2374#0 GCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGT 430 consensus_2374#1 GCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGT 539 ************************************************************ consensus_2374#0 TTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTC 490 consensus_2374#1 TTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTC 599 ************************************************************ consensus_2374#0 GTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGG 550 consensus_2374#1 GTACTGGTTTGGGCCA-ATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGG 658 **************** ********* *********************** ******** consensus_2374#0 CATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACG 610 consensus_2374#1 CAT--------------------------------------------------------- 661 *** consensus_2374#0 CCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATA 670 consensus_2374#1 ------------------------------------------------------------ consensus_2374#0 ATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNG 730 consensus_2374#1 ------------------------------------------------------------ consensus_2374#0 TACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC 765 consensus_2374#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||