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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[TTTTTTTTTTTTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNGTACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC]
[+] EMBL CA764579 [TTTTTTTTTTTTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNGTACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC]
consensusID : consensus_2374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGATCGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCATGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCAATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGGCAT]
[+] EMBL CA762218 [TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGATCGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCATGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCAATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2374#0 ------------------------------------------------------------
consensus_2374#1 TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGAT 60
consensus_2374#0 --------------------------------------------------TTTTTTTTTT 10
consensus_2374#1 CGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCA 120
* *
consensus_2374#0 TTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAA 70
consensus_2374#1 TGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAA 180
* * * **************************************** ****
consensus_2374#0 ATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGT 130
consensus_2374#1 ATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGT 240
************************************************************
consensus_2374#0 GCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTC 190
consensus_2374#1 GCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTC 300
************************************************************
consensus_2374#0 TAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGG 250
consensus_2374#1 TAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAG-TGAGG 359
***************************************************** *****
consensus_2374#0 TTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGG 310
consensus_2374#1 TTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGG 419
************************************************************
consensus_2374#0 AAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCAT 370
consensus_2374#1 AAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCAT 479
************************************************************
consensus_2374#0 GCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGT 430
consensus_2374#1 GCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGT 539
************************************************************
consensus_2374#0 TTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTC 490
consensus_2374#1 TTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTC 599
************************************************************
consensus_2374#0 GTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGG 550
consensus_2374#1 GTACTGGTTTGGGCCA-ATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGG 658
**************** ********* *********************** ********
consensus_2374#0 CATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACG 610
consensus_2374#1 CAT--------------------------------------------------------- 661
***
consensus_2374#0 CCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATA 670
consensus_2374#1 ------------------------------------------------------------
consensus_2374#0 ATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNG 730
consensus_2374#1 ------------------------------------------------------------
consensus_2374#0 TACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC 765
consensus_2374#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||