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Oryza sativa
cluster # 2374 cluster # 2374       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2374#0 length = 765 sequences # 1  
consensus_2374#1 length = 661 sequences # 1  

consensusID : consensus_2374#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence
                              [TTTTTTTTTTTTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNGTACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC]

[+] EMBL CA764579             [TTTTTTTTTTTTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNGTACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC]


>consensus_2374#0 TTTTTTTTTTTTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCA CAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGA ATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAA TGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGA CTANGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTA AACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGC CTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGG CTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTT GGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATC TGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGC TCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGA GCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNG AGGGNCCGNGTACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC



consensusID : consensus_2374#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGATCGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCATGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCAATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGGCAT]

[+] EMBL CA762218             [TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGATCGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCATGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCAATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGGCAT]


>consensus_2374#1 TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGAT CGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCA TGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAA ATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGT GCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTC TAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGT TCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGA AGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCATG CCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTT TGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCG TACTGGTTTGGGCCAATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGGCA T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2374#0      ------------------------------------------------------------
consensus_2374#1      TTTTTTTTTTTTTTTTTTTGAGGGGCTGTACAGTAGTTAAATCATGAATCAATTCAGGAT 60
                                                                                  

consensus_2374#0      --------------------------------------------------TTTTTTTTTT 10
consensus_2374#1      CGAGTCAGAACAGCGGTTTGTAACATTTGTAAAGGAATGCCATTGCTATAGTGAACCTCA 120
                                                                         *     *  

consensus_2374#0      TTTTCTCTTTTTTTTTGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAA 70
consensus_2374#1      TGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAAAAAA 180
                      *      *    *  **************************************** ****

consensus_2374#0      ATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGT 130
consensus_2374#1      ATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGT 240
                      ************************************************************

consensus_2374#0      GCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTC 190
consensus_2374#1      GCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTC 300
                      ************************************************************

consensus_2374#0      TAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTANGTGAGG 250
consensus_2374#1      TAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAG-TGAGG 359
                      *****************************************************  *****

consensus_2374#0      TTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGG 310
consensus_2374#1      TTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGG 419
                      ************************************************************

consensus_2374#0      AAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCAT 370
consensus_2374#1      AAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGGCAT 479
                      ************************************************************

consensus_2374#0      GCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGT 430
consensus_2374#1      GCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGT 539
                      ************************************************************

consensus_2374#0      TTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTC 490
consensus_2374#1      TTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTC 599
                      ************************************************************

consensus_2374#0      GTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGG 550
consensus_2374#1      GTACTGGTTTGGGCCA-ATTTTTCGGTTTGCTGGTCCCTTCTTCCCTATCNTGAGAAAGG 658
                      **************** ********* ***********************  ********

consensus_2374#0      CATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACG 610
consensus_2374#1      CAT--------------------------------------------------------- 661
                      ***                                                         

consensus_2374#0      CCATAACCTCCCGGACCAGTATCCTTCTNCAGATCCACTACAGCCACAGAGCGCCTCATA 670
consensus_2374#1      ------------------------------------------------------------
                                                                                  

consensus_2374#0      ATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGGNGAGGGNCCGNG 730
consensus_2374#1      ------------------------------------------------------------
                                                                                  

consensus_2374#0      TACCCCTAAAGGATCAGAGCCTCATGCTGGCTNCC 765
consensus_2374#1      -----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)