cluster # 2375

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Oryza sativa
cluster # 2375 cluster # 2375 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2375#0 length = 762 sequences # 1

consensus_2375#1 length = 657 sequences # 1

consensusID : consensus_2375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 762
fasta sequence

                              [CACCTTGCGGCATCTCTCTGGGGAACCTCCTCAAATTGGCTAGAGAACCGAGCCGATCGCGACGAGCGCTTTACACCTCGTCGCATCCCGCCCAAATTTGGCAGCTCTTCATCTCACCACAAATCCTCTGAAATCTTGTTGCTAAAACGTAGTACTCTGTAAATAGATAATACTGACTTTTGATGCAATCCAGGTGAGTGGTAATTGCATCCCTTCTGCTCTGGCGCTTCTCGAGCACCAGGTTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACGACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCTCGATGACTTCGCCAAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGATCGCTGAGGTCGGGGAGCTGTCGGAGCTGTTCATGTGGAAAGGGGAGGTGGCCAAGGGCCTGCCCGGGTGGAAGGAGTCGGAGAAGGAGCACCTCGGCGAGGAGCTCTCCGACGTGCTGCTCT]

[+] EMBL CB660726             [CACCTTGCGGCATCTCTCTGGGGAACCTCCTCAAATTGGCTAGAGAACCGAGCCGATCGCGACGAGCGCTTTACACCTCGTCGCATCCCGCCCAAATTTGGCAGCTCTTCATCTCACCACAAATCCTCTGAAATCTTGTTGCTAAAACGTAGTACTCTGTAAATAGATAATACTGACTTTTGATGCAATCCAGGTGAGTGGTAATTGCATCCCTTCTGCTCTGGCGCTTCTCGAGCACCAGGTTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACGACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCTCGATGACTTCGCCAAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGATCGCTGAGGTCGGGGAGCTGTCGGAGCTGTTCATGTGGAAAGGGGAGGTGGCCAAGGGCCTGCCCGGGTGGAAGGAGTCGGAGAAGGAGCACCTCGGCGAGGAGCTCTCCGACGTGCTGCTCT]




>consensus_2375#0
CACCTTGCGGCATCTCTCTGGGGAACCTCCTCAAATTGGCTAGAGAACCGAGCCGATCGC
GACGAGCGCTTTACACCTCGTCGCATCCCGCCCAAATTTGGCAGCTCTTCATCTCACCAC
AAATCCTCTGAAATCTTGTTGCTAAAACGTAGTACTCTGTAAATAGATAATACTGACTTT
TGATGCAATCCAGGTGAGTGGTAATTGCATCCCTTCTGCTCTGGCGCTTCTCGAGCACCA
GGTTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACT
TTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACG
CCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGG
TGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACGA
CCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAAGGAGGAGGCGGCGGCTTCTG
ACGTGAGCCTGAAGGAGCTGTCCAAGAAGCTCGATGACTTCGCCAAGGAGAGGGACTGGG
AGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGATCGCTGAGGTCGGGGAGCTGT
CGGAGCTGTTCATGTGGAAAGGGGAGGTGGCCAAGGGCCTGCCCGGGTGGAAGGAGTCGG
AGAAGGAGCACCTCGGCGAGGAGCTCTCCGACGTGCTGCTCT

consensusID : consensus_2375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [AGAATATATCACGTTATAATGTCTGGAGACAAGAACCGATACTTTCAACACCCCCCTCACTTTTTTGAAAGAAAGAAAAGAAAACAGTACACAACAAAAACATATCTTCTGAGCTTCTCTCGCGAAGATAAACACTCGTAGAGTTGCAGAATCAGTTCATGCAGGTACCAGAATTCAGTTCATTCAAGGGCTCTTCGACGGCGCTGGGTACTTGACGGCGTTCTTGACGATCTTCCTGGGGGCGGCGTTCTCNAGGACCAAGCTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTGCGATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACTACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACTAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCCTCGATGACTTCGCCCAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCC]

[+] EMBL CB660727             [AGAATATATCACGTTATAATGTCTGGAGACAAGAACCGATACTTTCAACACCCCCCTCACTTTTTTGAAAGAAAGAAAAGAAAACAGTACACAACAAAAACATATCTTCTGAGCTTCTCTCGCGAAGATAAACACTCGTAGAGTTGCAGAATCAGTTCATGCAGGTACCAGAATTCAGTTCATTCAAGGGCTCTTCGACGGCGCTGGGTACTTGACGGCGTTCTTGACGATCTTCCTGGGGGCGGCGTTCTCNAGGACCAAGCTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTGCGATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACTACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACTAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCCTCGATGACTTCGCCCAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCC]




>consensus_2375#1
AGAATATATCACGTTATAATGTCTGGAGACAAGAACCGATACTTTCAACACCCCCCTCAC
TTTTTTGAAAGAAAGAAAAGAAAACAGTACACAACAAAAACATATCTTCTGAGCTTCTCT
CGCGAAGATAAACACTCGTAGAGTTGCAGAATCAGTTCATGCAGGTACCAGAATTCAGTT
CATTCAAGGGCTCTTCGACGGCGCTGGGTACTTGACGGCGTTCTTGACGATCTTCCTGGG
GGCGGCGTTCTCNAGGACCAAGCTTGCAGGGAAATATATATGGGCACACTTGCATCGCCT
TTACTACGTCCATTAACACTTTGCGATTTGTTTAATTACCTGCTAACTTTGCTGCATCCC
TCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAG
GTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGA
GGTCGAGAAGAAGGCGACTACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACTAAGAA
GGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCCTCGATGACT
TCGCCCAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2375#0      ----CACCTTGCGGCATCTCTCTGGGGAACCTCCTCAAATTGGCTAGAGAACCGAGCCGA 56
consensus_2375#1      AGAATATATCACGTTATAATGTCTGGAGACAAGAACCGATACTTTCAACACCCCCCTCAC 60
                           *  *  **  **       **  **     *  **    *  * * **    *  

consensus_2375#0      TCGCGACGAGCGCTTTACACCTCGTCGCATCCCGCCCAAATTTGGCAGCTCTTCATCTCA 116
consensus_2375#1      TTTTTTGAAAGAAAGAAAAGAAAACAGTACACAACAAAAACATATCTTCTGAGCTTCTCT 120
                      *       *       * *       * *  *  *  ***  *  *  **   * **** 

consensus_2375#0      C-CACAAATCCTCTGAAATCTTGTTGCTAAAACGTAGTACTCTGTAAATAGATAATACTG 175
consensus_2375#1      CGCGAAGATAAACACTCGTAGAGTTGCAGAATCAGTTCATGCAGGTACCAGAATTCAGTT 180
                      * *  * **   *     *   *****  ** *     *  * *  *  ***    * * 

consensus_2375#0      ACTTTTGATGCAATCCA--GGTGAGTGGTAATTG----CATCCCT-----TCTGCTCTGG 224
consensus_2375#1      CATTCAAGGGCTCTTCGACGGCGCTGGGTACTTGACGGCGTTCTTGACGATCTTCCTGGG 240
                        **     **  * *   ** *   **** ***    * * * *     *** *   **

consensus_2375#0      CGC----TTCTCGAGCACCAGGTTTGCAGGGAAATATATATGGGCACACTTGCATCGCCT 280
consensus_2375#1      GGCGGCGTTCTCNAGGACCAAGCTTGCAGGGAAATATATATGGGCACACTTGCATCGCCT 300
                       **    ***** ** **** * *************************************

consensus_2375#0      TTACTACGTCCATTAACACTTTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCC 340
consensus_2375#1      TTACTACGTCCATTAACACTTTGCGATTTGTTTAATTACCTGCTAACTTTGCTGCATCCC 360
                      ********************** * ***********************************

consensus_2375#0      TCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAG 400
consensus_2375#1      TCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAG 420
                      ************************************************************

consensus_2375#0      GTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGA 460
consensus_2375#1      GTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGA 480
                      ************************************************************

consensus_2375#0      GGTCGAGAAGAAGGCGACGACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAA 520
consensus_2375#1      GGTCGAGAAGAAGGCGACTACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACTAAGAA 540
                      ****************** *********************************** *****

consensus_2375#0      GGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGC-TCGATGACT 579
consensus_2375#1      GGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCCTCGATGACT 600
                      ************************************************** *********

consensus_2375#0      TCGCCAAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGA 639
consensus_2375#1      TCGCCCAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCC--- 657
                      ***** **************************************************    

consensus_2375#0      TCGCTGAGGTCGGGGAGCTGTCGGAGCTGTTCATGTGGAAAGGGGAGGTGGCCAAGGGCC 699
consensus_2375#1      ------------------------------------------------------------
                                                                                  

consensus_2375#0      TGCCCGGGTGGAAGGAGTCGGAGAAGGAGCACCTCGGCGAGGAGCTCTCCGACGTGCTGC 759
consensus_2375#1      ------------------------------------------------------------
                                                                                  

consensus_2375#0      TCT 762
consensus_2375#1      ---